View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_low_1 (Length: 450)
Name: NF17608_low_1
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 80 - 431
Target Start/End: Original strand, 28743778 - 28744125
Alignment:
| Q |
80 |
tttagcaaagaaattatccccattttcaaggacatattagccatgaatcaaaaatttcttccttcagcctccatttt-catcattaattgaaatgataac |
178 |
Q |
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| T |
28743778 |
tttagcaaagaaattatccccattttcaaggacatattagccatgaatcaaaaatttcttccttcagcctccatttttcatcattaattgaaatgatatc |
28743877 |
T |
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| Q |
179 |
cccttttattgcaaagtgggcatacattctttacagctaggagccagtctttgatgcaactcatgtggaatctatgtgcacagtccagtctttcaatttc |
278 |
Q |
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| T |
28743878 |
cccttttattgcaaagtgggcatacattctttacagctaggagccagtctttgatgcaactcatgtggaatctatgtgcacagtccagtctttcaatttc |
28743977 |
T |
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| Q |
279 |
ttcaccagcatcaaaattttcctggtattacatcaaatttgttagaaaatacatgcatagtctttcgatctaaccaaagagtgtatatagagcgcgatat |
378 |
Q |
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| T |
28743978 |
ttcaccagcatcaaaattttcctgatattacatcaaatttgttagaaaatacatgcatagtctttcgatctaacgaaagagtgtatatagagcgcgatat |
28744077 |
T |
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| Q |
379 |
aaatataattgaaaatgaattgaagtgacatccattcgttaagttaacctaat |
431 |
Q |
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| T |
28744078 |
a-----aattgaaaatgaattgaagtgacatgcattcgttaagttaacctaat |
28744125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 28743729 - 28743781
Alignment:
| Q |
12 |
aagaaaatacttcccatcattccgtctaaatgacaattaatacatttattttta |
65 |
Q |
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| T |
28743729 |
aagaaaagacttcccatcattccgtccaattga-aattaatacatttattttta |
28743781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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