View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_low_11 (Length: 214)
Name: NF17608_low_11
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 44194818 - 44194634
Alignment:
| Q |
18 |
aatagcagggttaacaatatgttcatcagccattactctatcacattgagtaggtccatcaacagcaactttgcaatcataactagcagtttgaggatcc |
117 |
Q |
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| T |
44194818 |
aatagcagggttaacaatatgctcatcagccattactctatcacattgagtaggtccatcaacagcaactttgcaatcataactagcagtttgaggatcc |
44194719 |
T |
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| Q |
118 |
tcagtgatttcacccaagcaacttttgaaagaccctactactccatcataagcaaaacctgcacatatttcaagttttggatttt |
202 |
Q |
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| T |
44194718 |
tcagtgatttcacccaagcaacttttgaaagaccctactactccatcataagcaaaacctgcacatgtttcaagttttggatttt |
44194634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 44301252 - 44301068
Alignment:
| Q |
18 |
aatagcagggttaacaatatgttcatcagccattactctatcacattgagtaggtccatcaacagcaactttgcaatcataactagcagtttgaggatcc |
117 |
Q |
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| T |
44301252 |
aatagcagggttaacaatatgctcatcagccattactctatcacattgagtaggtccatcaacagcaactttgcaatcataactagcagtttgaggatcc |
44301153 |
T |
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| Q |
118 |
tcagtgatttcacccaagcaacttttgaaagaccctactactccatcataagcaaaacctgcacatatttcaagttttggatttt |
202 |
Q |
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| T |
44301152 |
tcagtgatttcacccaagcaacttttgaaagaccctactactccatcataagcaaaacctgcacatgtttcaagttttggatttt |
44301068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 44308777 - 44308593
Alignment:
| Q |
18 |
aatagcagggttaacaatatgttcatcagccattactctatcacattgagtaggtccatcaacagcaactttgcaatcataactagcagtttgaggatcc |
117 |
Q |
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||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| ||| || |||| |||||||||||||||||||||||||||| |
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| T |
44308777 |
aatagcagggttaacaatatgcgcatcagccattattctatcgcattgagtaggtccgtcaccaacaacaccgcaatcataactagcagtttgaggatcc |
44308678 |
T |
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| Q |
118 |
tcagtgatttcacccaagcaacttttgaaagaccctactactccatcataagcaaaacctgcacatatttcaagttttggatttt |
202 |
Q |
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| T |
44308677 |
tcagtgatttcacccaagcaacttttgaaagaccctactactccatcataagcaaaacctgcacatgtttcaagttttggatttt |
44308593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 44315821 - 44315740
Alignment:
| Q |
21 |
agcagggttaacaatatgttcatcagccattactctatcacattgagtaggtccatcaacagcaactttgcaatcataacta |
102 |
Q |
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| T |
44315821 |
agcagggttaacaatatgatttgcagccattgcactatcgcatcgagtaggttcatcaacagcaactttgcaatcataacta |
44315740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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