View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_low_2 (Length: 434)
Name: NF17608_low_2
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 45037581 - 45037938
Alignment:
| Q |
18 |
caaagggaggatataagaatgctagtcaagaaatggtgggatatttacaatgattcatctcttgattacaacaagaatttgagtggaagtggtgaagtac |
117 |
Q |
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| T |
45037581 |
caaagggaggatataagaatgctagtcaagaaatggtgggatatttacaatgattcatctcttgattacaacaagaatttgagtggaagtggtgaagtac |
45037680 |
T |
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| Q |
118 |
aaacgaatggtgttgaaattgagccattcgtacaagcattgtctgaggtaggtcgtgttcaatatgtcacagcaccttcagcagcttaaactgagctgtt |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037681 |
aaacgaatggttttgaaattgagccattcgtacaagcattgtctgaggtaggtcgtgttcaatatgtcacagcaccttcagcagcttaaactgagctgtt |
45037780 |
T |
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| Q |
218 |
ttttggtgaccattcattcgtgcaatggaagcaaaaacataaaaaatgaagtaaggaataacgatggaaattattatggaagtgagtaaaaaagtttagg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45037781 |
ttttggtgaccattcattcgtgcaatggaagcaaaaacataaaaaatgaagtaaggaataacgatggaaattattatggaagtgagt-aaaaagtttagg |
45037879 |
T |
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| Q |
318 |
tgcaaccgttctagaannnnnnncaagaccaggggaaatggttggtgctatatttcagc |
376 |
Q |
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||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
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| T |
45037880 |
tgcaaccgttcaagaatttttttcaagacaaggggaaatggttggtgctatatttcagc |
45037938 |
T |
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