View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_low_3 (Length: 424)
Name: NF17608_low_3
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 38228066 - 38228458
Alignment:
| Q |
17 |
gttcattaacaaaataattagtatgctgcctagttataacagtaaggtcaaagttaagttatgcattcacaagcttttaatggaaaaagagaagccaagc |
116 |
Q |
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| T |
38228066 |
gttcattaacaaaataattagtatgctgcctagttataacagtaaggtcaaagttaagttatgcattcacaagcttttaatggaaaaagagaagccaagc |
38228165 |
T |
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| Q |
117 |
taaaccagaatagtgtaaactttattaagatcatgaggctataaagtatacgaaaattcccgcatggctacagaaacatcttttcatcaaggcaaagagc |
216 |
Q |
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| T |
38228166 |
taaaccagaatagtgtaaactttattaagatcatgaggctataaagtatacaaaaattcccgcatggctacagaaacatcttctcagcaaggcaaagagc |
38228265 |
T |
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| Q |
217 |
gcatgcgtttaccaatttctgcataaaattctcacctgataatctcaatatttcaaataaataatctgcaatattttcttccactaagacttgaatctga |
316 |
Q |
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| T |
38228266 |
gcatgcgtttaccaatttctgcataaaattctcacctgataatctcaatatttcaaataaataatctgcaatattttcttccactaagacttgaatctga |
38228365 |
T |
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| Q |
317 |
ttgcctgaagtcccaactgaagataaataatgaaagagcaaatctagagctccgatttggacttggctgactgatgaaagcaacgggcctttg |
409 |
Q |
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| T |
38228366 |
ttgcctgaagtcccaactgaagataaataatgaaagagcaaatctagagctccgatttggacttggctgactgatgaaagcaacgggcctttg |
38228458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 266 - 409
Target Start/End: Original strand, 16698762 - 16698903
Alignment:
| Q |
266 |
atttcaaataaataatctgcaatattttcttccactaagacttgaatctgattgcctgaagtcccaactgaagataaataatgaaagagcaaatctagag |
365 |
Q |
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| T |
16698762 |
atttcaaataaataacctgcaatattttcttccaccacgacatgaatctgattgccttaagtcccaactgaagacaaataatgaaagtgcaaatctagag |
16698861 |
T |
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| Q |
366 |
ctccgatttggacttggctgactgatgaaagcaacgggcctttg |
409 |
Q |
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| T |
16698862 |
ttcagatttggaattgact--ctgatgaaagtaacgggcctttg |
16698903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 280
Target Start/End: Original strand, 39304865 - 39305020
Alignment:
| Q |
129 |
gtgtaaactttattaagatcatgaggctataaagtatacgaaaattcccgcatggctacagaaacatct-tttcatcaaggcaaagagcgcatgcgttta |
227 |
Q |
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| T |
39304865 |
gtgtaaactttattcaaataatgaggctataaagtatgcaaagtttccttcatagatacataaatatctctttcatcaaggcaaaggacgcctgcattta |
39304964 |
T |
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| Q |
228 |
ccaatttctgcataaa---attctcacctgataatctcaatatttcaaataaataa |
280 |
Q |
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|||||| |||||||| ||||| |||| ||| ||||||||||||||||||||| |
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| T |
39304965 |
gcaatttttgcataaagttcttctcccctggtaacctcaatatttcaaataaataa |
39305020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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