View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_low_9 (Length: 250)
Name: NF17608_low_9
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 33900827 - 33900584
Alignment:
| Q |
7 |
tccaagaatataaacagaatagaaataagctgcatttgttcctaatgctatcaacaaatccatgtttgcataacctttgctcaaagctttataggctcca |
106 |
Q |
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| T |
33900827 |
tccaacaacataaacagaatagaaataagctgcatttgttcctaatgctatcaacaaatccatgtttgcataacctttgctcaaagctttataggctcca |
33900728 |
T |
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| Q |
107 |
acataaaatcttcttcctatgacaaactgtaccggtgtcgaaaactcccaccgtatgagcaatccaatattcaacatattgacaattttgacctctaaaa |
206 |
Q |
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| T |
33900727 |
acataaaatcttcttcctatgacaaactgtaccggtgtcgaaaactcccaccgtatgagcaatccaatattcaacatattgacaattttgacctctaaaa |
33900628 |
T |
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| Q |
207 |
catctttaactccaggtatatacataagaaccatagatgttaaa |
250 |
Q |
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| T |
33900627 |
catttttaactccaggtatatacataagaaccatagatgttaaa |
33900584 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2781968 - 2782021
Alignment:
| Q |
16 |
ataaacagaatagaaataagctgcatttgttcctaatgctatcaacaaatccat |
69 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||| || |||||| |
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| T |
2781968 |
ataaacagaatagaaataagctgcatttgttcccagtgctatcagcacatccat |
2782021 |
T |
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