View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_high_1 (Length: 547)
Name: NF17609_high_1
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 15 - 528
Target Start/End: Complemental strand, 36349121 - 36348608
Alignment:
| Q |
15 |
cacagactaataacaacaagtaagaaaaacaaaacccttttttaatcacactcttaatgtaatcttgttttatatgaaaactctaccactttaagatttt |
114 |
Q |
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| T |
36349121 |
cacagactaataacaacaagtaagaaaaacaaaacccttttttaatcacactcttaatgtaatcttgttttatatgaaaactctaccactttaagatttt |
36349022 |
T |
|
| Q |
115 |
atgctgactttcatatcccttttggtagagatttgcacataagtgaggcgctgcaaatgcagattgaggttcagagaagactcaatgaacaacttgaggt |
214 |
Q |
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| T |
36349021 |
atgctgactttcatatcccttttggtagagatttgcacataagtgaggcgctgcaaatgcagattgaggttcagagaagactcaatgaacaacttgaggt |
36348922 |
T |
|
| Q |
215 |
gagtctttgcagcttaaatatatatgcatgttaattttggatcatatcagatcctctgcagcgacagtagagctgttagatcttagtatcattgattttg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348921 |
gagtctttgcagcttaaatatatatgcatgttaattttggatcatatcagatcctctgcagcgacagtagagctgttagatcttagtatcattgattttg |
36348822 |
T |
|
| Q |
315 |
aatgtaagatctaactttactgcagccgttgcagagaatccaatcgcgttaattttgtttcttgaattgtaagaaaccaatattcaaaacctgtgccagg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348821 |
aatgtaagatctaactttactgcagccgttgcagagaatccaatcgcgttaattttgtttcttgaattgtaagaaaccaatattcaaaacctgtgccagg |
36348722 |
T |
|
| Q |
415 |
tacaaagacacttgcagctaaggatagaagctcaagggaaataccttcaatcagtgcttgaaaaagctcaagaaacacttggtagacagaatttaggaat |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36348721 |
tacaaagacacttgcagctaaggatagaagctcaagggaaataccttcaatcagtgcttgaaaaagctcaagaaacacttggtagacagaatttaggaat |
36348622 |
T |
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| Q |
515 |
agtagggcttgaag |
528 |
Q |
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|||||||||||||| |
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| T |
36348621 |
agtagggcttgaag |
36348608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 411 - 512
Target Start/End: Complemental strand, 10292394 - 10292293
Alignment:
| Q |
411 |
caggtacaaagacacttgcagctaaggatagaagctcaagggaaataccttcaatcagtgcttgaaaaagctcaagaaacacttggtagacagaatttag |
510 |
Q |
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||||||||| ||||||| || ||| ||||||| ||||||||||| ||||||||||||||||||||||||||| | |||||||| || ||||| ||||||| |
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| T |
10292394 |
caggtacaacgacacttacaactacggatagaggctcaagggaagtaccttcaatcagtgcttgaaaaagctaaggaaacactaggaagacaaaatttag |
10292295 |
T |
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| Q |
511 |
ga |
512 |
Q |
| |
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|| |
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| T |
10292294 |
ga |
10292293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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