View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_high_2 (Length: 354)
Name: NF17609_high_2
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_high_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 11754156 - 11753812
Alignment:
| Q |
10 |
agatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggagcgagtgtccttttaaacatcctcatgagaatgct |
109 |
Q |
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| T |
11754156 |
agatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggaccgagtgtccttttaaacatcctcatgagaatgct |
11754057 |
T |
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| Q |
110 |
cgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaaggggactgcaaacgtgcagatatgtgtgaatttgctcatg |
209 |
Q |
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| T |
11754056 |
cgaaggagagaccttagaaagttcacctacagctgtgtaccatgccctgattttaaaaaaggggactgcaaacgtgcagatacgtgtgaatttgctcatg |
11753957 |
T |
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| Q |
210 |
gactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgaccgaaaggtgtgcttttttgcacacttagc |
309 |
Q |
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| T |
11753956 |
gactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgaccgaaaggtgtgcttttttgcacacttagc |
11753857 |
T |
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| Q |
310 |
taaagagctgcgtccaatatatgtgtccactggatctgctgttcc |
354 |
Q |
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| T |
11753856 |
tgaagagctgcgtccaatatatgtctccactggatctgctgttcc |
11753812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 11688497 - 11688182
Alignment:
| Q |
10 |
agatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggagcgagtgtccttttaaacatcctcatgagaatgct |
109 |
Q |
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| T |
11688497 |
agatgaatttcgcatgtattcggtcaaggtccttctttgtcatcgtgcatacactcataattggaccgagtgtcctttttaccatcctaatgagaatgca |
11688398 |
T |
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| Q |
110 |
cgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaaggggactgcaaacgtgcagatatgtgtgaatttgctcatg |
209 |
Q |
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| T |
11688397 |
cgaaggagagaccctagaaagttcacctacagctgtgtgccatgcgctgattttaaaactagggattgcaaacgtggtgatatgtgtgaatatgctcatg |
11688298 |
T |
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| Q |
210 |
gactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgaccgaaaggtgtgcttttttgcacacttagc |
309 |
Q |
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| T |
11688297 |
gagtattcgagacctggctacatccagatcagtatcgcacaaggctctgcaaagagggtactaattgtaaccgaaaggtgtgcttttttgcacatgttgc |
11688198 |
T |
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| Q |
310 |
taaagagctgcgtcca |
325 |
Q |
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| T |
11688197 |
tgaagagctgcgtcca |
11688182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 9314879 - 9314535
Alignment:
| Q |
10 |
agatgaatttcgcatgtattcgtttaaggttcttctttgtcctcgtgcatactctcatgattggagcgagtgtccttttaaacatcctcatgagaatgct |
109 |
Q |
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||||||||| ||||||||||| || ||||||| || |||| |||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
9314879 |
agatgaattccgcatgtattcattcaaggttcgtccttgttctcgtgcatactctcatgattggactgagtgtccttttgtgcatcctggagagaatgct |
9314780 |
T |
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| Q |
110 |
cgaaggagagaccttagaaagttcacctacagctgtgtgccatgccctgattttaaaaaaggggactgcaaacgtgcagatatgtgtgaatttgctcatg |
209 |
Q |
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| T |
9314779 |
cgaaggagagaccctagaaagtttcactacagctgtgtgccatgccctgattttaggaaaggggcttgccgacgttcggatatgtgtgaatatgctcatg |
9314680 |
T |
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| Q |
210 |
gactattcgagacatggctacacccagatcggtatcgcacaattctctgcaaagatggtactagttgtgaccgaaaggtgtgcttttttgcacacttagc |
309 |
Q |
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|| |||||||| ||||||||||||| || |||||| |||| || |||||||| |||| ||||| |||||| ||||||||| || || |||| | | |
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| T |
9314679 |
gagtattcgagtgctggctacacccagctcagtatcggacaaggctgtgcaaagacggtatgggttgtaaccgaagggtgtgcttcttcgctcactcacc |
9314580 |
T |
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| Q |
310 |
taaagagctgcgtccaatatatgtgtccactggatctgctgttcc |
354 |
Q |
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| ||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
9314579 |
tgaagagctgcgtccgctgtatgtgtccactggttctgctgttcc |
9314535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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