View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17609_high_5 (Length: 328)

Name: NF17609_high_5
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17609_high_5
NF17609_high_5
[»] chr1 (1 HSPs)
chr1 (12-310)||(5130749-5131047)
[»] chr5 (11 HSPs)
chr5 (13-140)||(8677749-8677872)
chr5 (12-128)||(9074768-9074883)
chr5 (15-116)||(8535447-8535547)
chr5 (13-123)||(8636811-8636920)
chr5 (13-139)||(8644156-8644278)
chr5 (12-123)||(8528889-8528999)
chr5 (74-121)||(8548146-8548193)
chr5 (62-124)||(8641357-8641419)
chr5 (79-128)||(1600331-1600380)
chr5 (222-259)||(8535690-8535727)
chr5 (227-259)||(1600180-1600212)
[»] chr7 (4 HSPs)
chr7 (20-123)||(48361902-48362004)
chr7 (14-94)||(35779782-35779861)
chr7 (227-259)||(35780022-35780054)
chr7 (227-259)||(48361732-48361764)
[»] chr4 (1 HSPs)
chr4 (12-123)||(9443050-9443160)
[»] chr6 (2 HSPs)
chr6 (74-120)||(16716363-16716409)
chr6 (223-259)||(16716536-16716572)
[»] scaffold0627 (2 HSPs)
scaffold0627 (74-120)||(4663-4709)
scaffold0627 (227-259)||(4841-4873)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 5130749 - 5131047
Alignment:
Q  12 atgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtg 111  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130749 atgaattcgaaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtg 5130848  T
Q  112 ttttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattatgga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130849 ttttaccggccaaaaacataaaccataattgctgaaaagactgactgaagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattatgga 5130948  T
Q  212 aagaacatgcatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaaatgattatgattttcaaacacatgtggag 310  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  5130949 aagaacacgcatcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggag 5131047  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 8677749 - 8677872
Alignment:
Q  13 tgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 112  Q
    |||||||||||||||||| | | || |||||| ||||||| ||| || || ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  8677749 tgaattcgaaaaactttgaaaccatgtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgt 8677847  T
Q  113 tttaccggccaaaaacataaaccataat 140  Q
    ||||||||||   |||||||||||||||    
T  8677848 tttaccggcc---aacataaaccataat 8677872  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 9074883 - 9074768
Alignment:
Q  12 atgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtg 111  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| | |||| |||||| ||| || ||||||||| ||||||||||||||| |||||||||||    
T  9074883 atgaattcgaaaaactttgaatccatatttctcaggttcatag-aagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtg 9074785  T
Q  112 ttttaccggccaaaaac 128  Q
    ||||| |||||| ||||    
T  9074784 ttttatcggccataaac 9074768  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 8535447 - 8535547
Alignment:
Q  15 aattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttt 114  Q
    |||||||||||||| | ||| ||||||||| ||||||| ||| || |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  8535447 aattcgaaaaacttcgaatccatatttctcaggttcatagta-gataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttt 8535545  T
Q  115 ta 116  Q
    ||    
T  8535546 ta 8535547  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 8636811 - 8636920
Alignment:
Q  13 tgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 112  Q
    ||||||| |||||||||| | | |  |||||| ||||||| ||| || || ||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  8636811 tgaattctaaaaactttgaaaccaagtttctcgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgt 8636909  T
Q  113 tttaccggcca 123  Q
    |||||||||||    
T  8636910 tttaccggcca 8636920  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 8644156 - 8644278
Alignment:
Q  13 tgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgt 112  Q
    |||||||||||||||||| |   || |||||  ||||||| ||| || || ||| |||||||||||||||| |||||||||||| ||||||||||||| |    
T  8644156 tgaattcgaaaaactttgaaagcatgtttcttgggttcatagta-gataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttt 8644254  T
Q  113 tttaccggccaaaaacataaaccataa 139  Q
    ||||||||||   ||||||||||||||    
T  8644255 tttaccggcc---aacataaaccataa 8644278  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 8528889 - 8528999
Alignment:
Q  12 atgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtg 111  Q
    ||||||||||||||||||| | | |||||| || ||||| | ||| |  |||||| ||| |||||||||||  ||||||||||||||| |||||||||||    
T  8528889 atgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtg 8528987  T
Q  112 ttttaccggcca 123  Q
    ||||| ||||||    
T  8528988 ttttatcggcca 8528999  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 8548193 - 8548146
Alignment:
Q  74 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggc 121  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8548193 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 8548146  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 8641357 - 8641419
Alignment:
Q  62 aaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaa 124  Q
    ||||| |||||||||||||||| | |||  |||||||| |||||||||||| |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaa 8641419  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 1600380 - 1600331
Alignment:
Q  79 atatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaac 128  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||| ||||    
T  1600380 atataacaatatggcagcaccttcttcaaagtgttgtatcggccataaac 1600331  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 8535690 - 8535727
Alignment:
Q  222 atcagaaatgtaaagcaatccctttaattctcccatgc 259  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  8535690 atcacaaatgtaaagaaatccctttaattctcccatgc 8535727  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 1600212 - 1600180
Alignment:
Q  227 aaatgtaaagcaatccctttaattctcccatgc 259  Q
    |||||||||| ||||||||||||||||||||||    
T  1600212 aaatgtaaagaaatccctttaattctcccatgc 1600180  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 48362004 - 48361902
Alignment:
Q  20 gaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccg 119  Q
    ||||| ||||||||||||||||||| |||||||  || ||  |||| || | |||||||||||| ||||||||||||||| |||||||||||||||| ||    
T  48362004 gaaaagctttgcatctatatttctcaggttcataata-gattaaacggtcgtaggaatgatataacaatatggcagcaccttcttcaaagtgttttatcg 48361906  T
Q  120 gcca 123  Q
    ||||    
T  48361905 gcca 48361902  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 35779782 - 35779861
Alignment:
Q  14 gaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggca 94  Q
    ||||||||||||||||| ||| ||||||||| ||||||  || ||| |||||| ||||| |||||||||| ||||||||||    
T  35779782 gaattcgaaaaactttgtatccatatttctcaggttcaaagt-agataaaacaattgcatgaatgatataacaatatggca 35779861  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 35780022 - 35780054
Alignment:
Q  227 aaatgtaaagcaatccctttaattctcccatgc 259  Q
    |||||||||| ||||||||||||||||||||||    
T  35780022 aaatgtaaagaaatccctttaattctcccatgc 35780054  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 48361764 - 48361732
Alignment:
Q  227 aaatgtaaagcaatccctttaattctcccatgc 259  Q
    |||||||||| ||||||||||||||||||||||    
T  48361764 aaatgtaaagaaatccctttaattctcccatgc 48361732  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 9443050 - 9443160
Alignment:
Q  12 atgaattcgaaaaactttgcatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtg 111  Q
    ||||||||||||||||||| | | |||||| || ||||| | ||| |  |||||| ||| |||||||||||  ||||||||||||||| |||||||||||    
T  9443050 atgaattcgaaaaactttgaacccatatttttcaggttcgtagtaggt-aaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtg 9443148  T
Q  112 ttttaccggcca 123  Q
    ||||| ||||||    
T  9443149 ttttatcggcca 9443160  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
Q  74 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 120  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg 16716409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 16716536 - 16716572
Alignment:
Q  223 tcagaaatgtaaagcaatccctttaattctcccatgc 259  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16716536 tcagaaatgtatagaaatccctttaattctcccatgc 16716572  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 4663 - 4709
Alignment:
Q  74 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 120  Q
    ||||||| || |||||  |||||||||||||||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg 4709  T

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Target: scaffold0627; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 4841 - 4873
Alignment:
Q  227 aaatgtaaagcaatccctttaattctcccatgc 259  Q
    |||||||||| ||||||||||||||||||||||    
T  4841 aaatgtaaagaaatccctttaattctcccatgc 4873  T

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