View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_high_6 (Length: 308)
Name: NF17609_high_6
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 172 - 291
Target Start/End: Original strand, 19728703 - 19728822
Alignment:
| Q |
172 |
cagaaatttaaaataccgagtttttattgttcgaattttcaagttaaacaccacgacgatataatacagtattcaaaacatgttcattagattgagttgt |
271 |
Q |
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| T |
19728703 |
cagaaatttaaaataccgagtttttattgttcgagttttcaagttaaacaccatggcgatatgatacagtattcaaaacatgttcattagattgagttgt |
19728802 |
T |
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| Q |
272 |
gtgttctgctattgtcaagt |
291 |
Q |
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| T |
19728803 |
atgttctgctattgtcaagt |
19728822 |
T |
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Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 19728608 - 19728680
Alignment:
| Q |
12 |
atgaatatgttttagaccttaaaatggcatgttggaaaggttttggaatgttggagtgttaatgttgattgaa |
84 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19728608 |
atgaatatgttttagaccttaacatggtatgttggaaaggttttggaatgtcggagtgttaatgttgattgaa |
19728680 |
T |
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