View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_1 (Length: 655)
Name: NF17609_low_1
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 10 - 637
Target Start/End: Original strand, 27371927 - 27372571
Alignment:
| Q |
10 |
aattctgacaataagacaacaaacaaagggaaacaaagccattacaaaattttatttgaagtatggacgtgaaattaaagggtagttgggtctactatgt |
109 |
Q |
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| T |
27371927 |
aattatgacaataagacaacaaacaaagggatacagagccattacaaaattttgtttgaagtatggacgtgaaattaaagggtaggtgggtgtactaggt |
27372026 |
T |
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| Q |
110 |
aaatttgtaaaggtgt---ggtgttagagtacttttgagttgaatgaccataaacttttactactattcctaatttgatgttgtt-------gatttctt |
199 |
Q |
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| T |
27372027 |
aaatttgtaaaggtgatgaggtgttaga---cttttgagttgactgaccataaacttttactactattcctaatttggtgttgttgaatgttgatttctt |
27372123 |
T |
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| Q |
200 |
caaatttcaaaataaaataacattatattgttgacttcaaagttcaaacgttagaattaatggagatgcgacgttacaatcatattcatatactatgtat |
299 |
Q |
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| T |
27372124 |
caaatttcaaaataaaataacatgatattgttgacttcaaagttcaaacgttagaattaatggagatgcgacgttacaatcatattcatatactgtgtat |
27372223 |
T |
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| Q |
300 |
ataaatgtgaggttttacgtattcctttactttgactttgatttggttgattttgagctataaacaacacatacagtatatgtcagatacgaatagaaga |
399 |
Q |
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| T |
27372224 |
ataaacgtgaggttttacgtattcctttactttgactttgatttggttgattttgagctataaacaacacatacagtatatgtcagatacgaatagaaga |
27372323 |
T |
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| Q |
400 |
aaaatgcttgataaggtattgattgaataacaaacaaatataac----------agagtgaagacagtggtgagttagtgacaatgacataattcnnnnn |
489 |
Q |
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| T |
27372324 |
aaaatgcttgataaggtattgattgaataacaaacaaatataacgagaacagaaagagtgaagacagtggtgagttagtaacaatgacataattcaaaaa |
27372423 |
T |
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| Q |
490 |
nncaaggcaacatggccaaacagtacgaaactttcaaaagaaacggacataccccaaaaaacaataatgcttgatgtcatgaatatattttcgtggaaaa |
589 |
Q |
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| T |
27372424 |
aacaaggcaacatggccaaacagtacgaaactttcaaaagaaaaggacattccccaaaaaacaataatgcttgatgtcatgaatatattttcgtggaaaa |
27372523 |
T |
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| Q |
590 |
cacaggaatcatatttttcaatcactagatacaacaaaatggtcaacc |
637 |
Q |
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| T |
27372524 |
cacaggaatgatatttttcaatcactagatacaacaaaatggtcaacc |
27372571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 3587102 - 3587070
Alignment:
| Q |
325 |
tttactttgactttgatttggttgattttgagc |
357 |
Q |
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| T |
3587102 |
tttactttgactttgatttggttgattttgagc |
3587070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 356
Target Start/End: Complemental strand, 31681291 - 31681260
Alignment:
| Q |
325 |
tttactttgactttgatttggttgattttgag |
356 |
Q |
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| T |
31681291 |
tttactttgactttgatttggttgattttgag |
31681260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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