View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17609_low_12 (Length: 252)
Name: NF17609_low_12
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 33900439 - 33900202
Alignment:
| Q |
1 |
atgaaagttcttggaccagtcatataaggtttataagttaagacaattttattaatgtctaaatatgtttctatggtttcaacaccttgaagtgtcctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33900439 |
atgaaagttcttggaccagtcatataaggtttataagttaagacaattttattaatgtctaaatatgtttctatggtttcaacaccttgaagtgtcctaa |
33900340 |
T |
|
| Q |
101 |
gagattgttcaatgatatacattgattgttcattttttatgccatcaattttaagttcaattttgcttatgtgttcccctttgcttattaatatgggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33900339 |
gagattgttcaatgatatacattgattgttcattttttatgccatcaattttaagttcaattttgcttatgtgttcccctttgcttattaatatgggatt |
33900240 |
T |
|
| Q |
201 |
aaaacctgtgtttgatatagtttccattagttgagtgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33900239 |
aaaacctgtgtttgatatagtttccattagttgagtgt |
33900202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University