View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_13 (Length: 243)
Name: NF17609_low_13
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40191615 - 40191853
Alignment:
| Q |
1 |
catacaaagttttgtccattaaattcaatccttccatttgcaaactcctcttctctacctcatttcctacatacttgatctgnnnnnnnnnnnnnntcat |
100 |
Q |
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| T |
40191615 |
catacaaagttttgtccattaaattcaatccttccatttgcaaactcctcttctctacctcatttcctacatacttgatctgaaaaagaaaaaaattcat |
40191714 |
T |
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| Q |
101 |
tcacataaaaacctatgaaacacatacacctgacacaaacaccgagacatcaacatcgatcataatttgagaaaatcgcatatttcaatctaaagtaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40191715 |
tcacataaaaacctatgaaacacatacacctgacacaaacaccgagccatcaacatcgatcataatttgagaaaatcgcatatttcaatccaaagtaatc |
40191814 |
T |
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| Q |
201 |
acatgtctcagtgccaaacactaacacatgtcagaagtg |
239 |
Q |
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| T |
40191815 |
acatgtctcagtaccaaacactaacacatgtcagaagtg |
40191853 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 8820389 - 8820445
Alignment:
| Q |
133 |
acacaaacaccgagacatcaacatcgatcataatttgagaaaatcgcatatttcaat |
189 |
Q |
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| T |
8820389 |
acacaaacactgacacgtcaacatcgataataatttgataaaatcacataattcaat |
8820445 |
T |
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