View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_14 (Length: 221)
Name: NF17609_low_14
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 8 - 204
Target Start/End: Complemental strand, 47074549 - 47074353
Alignment:
| Q |
8 |
ggtagattatactggtaagtagctatttttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcgctatgtgtcca |
107 |
Q |
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| T |
47074549 |
ggtagatttcactggtaagtagctatttttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcactatgtgtcca |
47074450 |
T |
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| Q |
108 |
gcttcaaatggaaatcctcaacagccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttgatatgatact |
204 |
Q |
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| T |
47074449 |
gcttcaaatggaaatcctcaacagccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttaatatgatact |
47074353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 47056526 - 47056387
Alignment:
| Q |
58 |
tagtactaatttcatatctgtagtttgttaagtgcttcgctatgtgtccagcttcaaatggaaatcctcaacagccagattctttgcattacatggattt |
157 |
Q |
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| T |
47056526 |
tagtactaatttcatctttgtagtttgtgaaaagcttcaatgttttttcagcttcaaatggagatcctcaaaagtcagattctttgcattacatcgatga |
47056427 |
T |
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| Q |
158 |
atctggtcggttaaattcatatcaaaaggtaagcttgata |
197 |
Q |
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| T |
47056426 |
atctggtcggttaaattcataccaaaaggtaagattgata |
47056387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 18230881 - 18231046
Alignment:
| Q |
36 |
ttctattgactaaggtgaataatagtactaatttcatatctgtagtttgttaagtgcttcgctatgt----gtccagcttcaaatggaaatcctcaacag |
131 |
Q |
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| T |
18230881 |
ttctattaattaaggtcaataatagtactaatttcatatttgtagtttgttaatagcttcaatatatatatgtccagcttcaaacggaagtcctcaacag |
18230980 |
T |
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| Q |
132 |
ccagattctttgcattacatggatttatctggtcggttaaattcatatcaaaaggtaagcttgata |
197 |
Q |
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| T |
18230981 |
ccagattctttgcattacatcgatttatccggtcggttaaattcataccaaaaggtaagcttgata |
18231046 |
T |
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