View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_15 (Length: 220)
Name: NF17609_low_15
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_15 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 13184536 - 13184327
Alignment:
| Q |
6 |
gatgagtatctttcgcagcagacaccaatagttggccttattttaatttgttatgggaagaataacttttttgaggcaaaaaatatttaannnnnnncat |
105 |
Q |
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| T |
13184536 |
gatgagtatctttcgcagcaaacaccaatagttggccttatttt-----gttatggtaagaataacttttttgaggcaaaaaatatttaattttttttat |
13184442 |
T |
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| Q |
106 |
tgaaatgttatataagaacacatatttcaaatgcaggggagttcttccagctcgggctcaagcgtgttcttctttcttccatcttcgaaattctctttga |
205 |
Q |
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| T |
13184441 |
tgaaatgttacataagaacacatatttcaaatgcaggggagttcttccagctcgggctcaagcgtgttcttctttcttccatcttcgaaattctctttga |
13184342 |
T |
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| Q |
206 |
gctcctctaattctg |
220 |
Q |
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| T |
13184341 |
gctcctctaattctg |
13184327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 13091305 - 13091518
Alignment:
| Q |
4 |
atgatgagtatctttcgcagcagacaccaatagttggccttattttaatttgttatgggaagaataacttttttgaggcaaaaaatatttaannnnnnnc |
103 |
Q |
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| T |
13091305 |
atgatgagtatctttcgcagcaaacaccaatagttagccttatttt-----gttatgataagaataacttttttgaggcaaaaaatatttaatttttgtt |
13091399 |
T |
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| Q |
104 |
--attgaaatgttatataagaacacatatttcaaatgcaggggagttcttccagctcgggctcaagcgtgttcttctttcttccatcttcgaaattctct |
201 |
Q |
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| T |
13091400 |
ttattgaaatgttatataagaacacatatttcaaatgcaggggagttcttctagctcgggctcaagggtgttcttctttcttccatcttcgaaattctct |
13091499 |
T |
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| Q |
202 |
ttgagctcctctaattctg |
220 |
Q |
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| T |
13091500 |
ttgagctcctctaattctg |
13091518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 13104920 - 13105132
Alignment:
| Q |
1 |
ttaatgatgagtatctttcgcagcagacaccaatagttggccttattttaatttgttatgggaagaataacttttttgaggcaaaaaatatt-taannnn |
99 |
Q |
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| T |
13104920 |
ttaatgatgagtatctttcgcagcaaacaccaatagttagtcttatttt-----gttatagtaagaataacttttttgaggcaaaaaatattatattttt |
13105014 |
T |
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| Q |
100 |
nnncattgaaatgttatataagaacacatatttcaaatgcaggggagttcttccagctcgggctcaagcgtgttcttctttcttccatcttcgaaattct |
199 |
Q |
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| T |
13105015 |
ttttattgaaatgttatataagaacacatatt-caaatgctggagagttcttccagctcgggctcaagcgtgttcttctttcttccatcttcgaaattct |
13105113 |
T |
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| Q |
200 |
ctttgagctcctctaattc |
218 |
Q |
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| T |
13105114 |
ctttgagctcatctaattc |
13105132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 13122144 - 13122192
Alignment:
| Q |
168 |
cgtgttcttctttcttccatcttcgaaattctctttgagctcctctaat |
216 |
Q |
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| T |
13122144 |
cgtgtcctttttccttccatcttcaaaattctctttgtgctcctctaat |
13122192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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