View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_4 (Length: 354)
Name: NF17609_low_4
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 11119693 - 11119355
Alignment:
| Q |
12 |
gtgagaagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaaggg |
111 |
Q |
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| T |
11119693 |
gtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaaggg |
11119594 |
T |
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| Q |
112 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
211 |
Q |
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| T |
11119593 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
11119494 |
T |
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| Q |
212 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatggatttaataatgtcatttcagaaccccaacttgaccctaacaatgcta |
311 |
Q |
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| T |
11119493 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatggatttaataatgtcatttcagaaccccaacttgaccctaacaatgaga |
11119394 |
T |
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| Q |
312 |
atgaagatgatgttgatggtgttattgttgttgatgatg |
350 |
Q |
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| T |
11119393 |
atgaagatgatgttgatggtgttattattgttgttgatg |
11119355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 39 - 244
Target Start/End: Complemental strand, 12206175 - 12205970
Alignment:
| Q |
39 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaa |
138 |
Q |
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| T |
12206175 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaa |
12206076 |
T |
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| Q |
139 |
tgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggct |
238 |
Q |
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| T |
12206075 |
tgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggct |
12205976 |
T |
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| Q |
239 |
ggggtt |
244 |
Q |
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|||||| |
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| T |
12205975 |
ggggtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 32741389 - 32741098
Alignment:
| Q |
20 |
aagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtgg |
119 |
Q |
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| T |
32741389 |
aagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtgg |
32741290 |
T |
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| Q |
120 |
cggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacag |
219 |
Q |
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| T |
32741289 |
cggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatag |
32741190 |
T |
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| Q |
220 |
tgaagaagagaggatggctggggttgatgataggtttgatgatggatttaataatgtcatttcagaaccccaacttgaccctaacaatgctaatgaagat |
319 |
Q |
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||||||||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32741189 |
tgaagaagagaagatggctgcggttgatgatgggtttg------------ataatgtcatttcagaaccccaacttgaccctaacaatgctaatgaagat |
32741102 |
T |
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