View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_5 (Length: 333)
Name: NF17609_low_5
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 43099194 - 43099499
Alignment:
| Q |
14 |
atgaacacaaattaaaacattgaacatgcacactcc----ctaatccattgttaaatcattaacatgctacactacccaataattcccaagtaacgttgt |
109 |
Q |
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| T |
43099194 |
atgaacacaaattaaaacattgaacatgcacactccacccctaatccattgttaaatcattaacatgctacactacccaataattcccaagtaacgttgt |
43099293 |
T |
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| Q |
110 |
taatgttggacgatggaattccaaagttcaaaggtttgcatgtaaccttcaagtgatattcactcggatgaaacaacccatccatcttaatcaaagtatt |
209 |
Q |
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| T |
43099294 |
taatgttggacgatggaattccaaagttcaaaggtttgcatgtaaccttcaagcgatattcactcggatgaaacaacccatccatcttaatcaaagtatt |
43099393 |
T |
|
| Q |
210 |
caccaccaccccaaattgcacaaatccacgaactcttccatcagtaataccaaaagataccctgttatccacaaaataatcgagaacttcgaattgtact |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43099394 |
caccaccaccccaaattgcacaaatccacgaactcttccatcagtaataccgaaagatacactgttatccacaaaataatcgagaacttcgaattgtact |
43099493 |
T |
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| Q |
310 |
cgtaac |
315 |
Q |
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|||||| |
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| T |
43099494 |
cgtaac |
43099499 |
T |
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