View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17609_low_9 (Length: 279)
Name: NF17609_low_9
Description: NF17609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17609_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 11811311 - 11811060
Alignment:
| Q |
18 |
attactgcatggaaagtcaagcttgtacgcgttccttcaatagtgacaattttcgatattccaaatagattagatcaaaatgctactacccttttcatga |
117 |
Q |
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| T |
11811311 |
attactgcatggaaagtcaagcttgtacgtgtccctttaatagtgacaattttcgatattccaaatagattagatcaaaatgctactacccttttcatga |
11811212 |
T |
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| Q |
118 |
aatggcaaattatagcaaacaagcttcctagtgaactttttcttcactcagttttgggaatagctgctaattcatcttctgatagtggaaaaactgtaac |
217 |
Q |
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| T |
11811211 |
aatggcaaattatagcaaacaagcttcctagtgaactttttcttcactcagttttgggaatagctgctaattcatcttctgatagtggaaaaactgtaac |
11811112 |
T |
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| Q |
218 |
tgtttctttcacaggactgtatcttgggaaatccgacgacttgctacctttg |
269 |
Q |
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| T |
11811111 |
tgtttctttcacaggactgtatcttgggaaatccgacgacttgctacctttg |
11811060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 11803567 - 11803318
Alignment:
| Q |
18 |
attactgcatggaaagtcaagcttgtacgcgttccttcaatagtgacaattttcgatattccaaatagattagatcaaaatgctactacccttttcatga |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| || |||| | |||||||||||||||||||||||| |
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| T |
11803567 |
attactgcatggaaagtcaagcttgtacaagttccttcaatagtgacagttttcaatattccaaagagtttaggtgaaaatgctactacccttttcatga |
11803468 |
T |
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| Q |
118 |
aatggcaaattatagcaaacaagcttcctagtgaactttttcttcactcagttttgggaatagctgctaattcatcttctgatagtggaaaaactgtaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
11803467 |
aatggcaaattatagcaaacaagcttcctagtgaactttttctgcactcagttataggactagctgctaattcatcttctgatggtggaaaaactgtact |
11803368 |
T |
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| Q |
218 |
tgtttctttcacaggactgtatcttgggaaatccgacgacttgctacctt |
267 |
Q |
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|| ||||||||||||||| |||||||||||||| ||| ||||||| |||| |
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| T |
11803367 |
tgcttctttcacaggactatatcttgggaaatctgacaacttgcttcctt |
11803318 |
T |
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