View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17610_high_3 (Length: 319)
Name: NF17610_high_3
Description: NF17610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17610_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 10423571 - 10423873
Alignment:
| Q |
1 |
tacaaagatttgttaggttcattcatggatgaaaaatcaggactaagtgatgaacaaatagcagataatgtaattggagttatttttgcagctcgtgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10423571 |
tacaaagatttgttaggttcattcatggatgaaaaatcaggactaagtgatgaacaaatagcagataatgtaattggagttatttttgcagctcgtgata |
10423670 |
T |
|
| Q |
101 |
ccacagctagtgtgcttacgtggattgttaagtaccttggtgaaaatatcagtgtcctagaatcagtgattgtaagtgtttagggtccta-ccctttatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10423671 |
ccacagctagtgtgcttacgtggattgttaagtaccttggtgaaaatatcagtgtcctagaatcagtgattgtaagtgtttagggtcctacccctttatc |
10423770 |
T |
|
| Q |
200 |
cttcaaagttcaatcattgttttgtnnnnnnnnctatttattattttttagtggcttgaaaaaattgtataatttggtttcttactttgttttgacatgt |
299 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
10423771 |
cttcaaagttcaatcattgttttgtaaaaaaaactatttattattttttggtggcttgaaaaatttgtatagtttggtttcttactttgttttgacatgt |
10423870 |
T |
|
| Q |
300 |
ttt |
302 |
Q |
| |
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||| |
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| T |
10423871 |
ttt |
10423873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 30523410 - 30523209
Alignment:
| Q |
1 |
tacaaagatttgttaggttcattcatggatgaaaaatcaggactaagtgatgaacaaatagcagataatgtaattggagttatttttgcagctcgtgata |
100 |
Q |
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||||| ||||| |||| ||| ||||||||||| ||| ||||||| ||||||||||||||| |||||||| | ||||| ||||||||||| |||||||| | |
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| T |
30523410 |
tacaatgatttattagcttctttcatggatgagaaagcaggacttagtgatgaacaaatatcagataatatcattggtgttatttttgctgctcgtgaca |
30523311 |
T |
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| Q |
101 |
ccacagctagtgtgcttacgtggattgttaagtaccttggtgaaaatatcagtgtcctagaatcagtgattgtaagtgtttagggtcctaccctttatcc |
200 |
Q |
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| || ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| | |||||| | | |||||||||| ||||||| |
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| T |
30523310 |
caactgctagtgtgcttacgtggattgtgaagtaccttggtgaaaatcctagtgtccttgaatcagtcacagtaagtatct-gggtcctaccttttatcc |
30523212 |
T |
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| Q |
201 |
ttc |
203 |
Q |
| |
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||| |
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| T |
30523211 |
ttc |
30523209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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