View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17610_low_2 (Length: 363)
Name: NF17610_low_2
Description: NF17610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17610_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 33777088 - 33776949
Alignment:
| Q |
24 |
atagtcatgcactcatactgtgcgtgttgaaacaatatcacttatattattaactttctttgaattttcctatttgaagaaaaagaaatagttaattagc |
123 |
Q |
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| T |
33777088 |
atagtcatacactcatactgtgcgtgttgaaacaatatcacttatattattaactttctttgaattttcctatttgaagaaaaagaaatagttaattagc |
33776989 |
T |
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| Q |
124 |
ccaactattttagannnnnnnaacacaataaaactctggt |
163 |
Q |
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| T |
33776988 |
ccaactattttagatttttttaacacaataaaactctggt |
33776949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 33776947 - 33776843
Alignment:
| Q |
257 |
atataggcacaaacccaca--gagatatatgcctatatgacatttatcacaacaatttgatggtgtg--------aagcagtaaaaatgtttgtttttat |
346 |
Q |
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| T |
33776947 |
atatatgcacaaacccacaaagagatatatgcctatatgacatttgtcacaacaatttgatagtgtgtatgcgctaagcagtaaagatgtttgtttttat |
33776848 |
T |
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| Q |
347 |
cttca |
351 |
Q |
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||||| |
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| T |
33776847 |
cttca |
33776843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 33774444 - 33774385
Alignment:
| Q |
192 |
tttaatttccaatgaaattacccactaataactagttgaattttaaaggcaaaatagcaa |
251 |
Q |
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||||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||||||| |
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| T |
33774444 |
tttaatttccaatgaaattactcactaattactagttaaattttaaacgcaaaatagcaa |
33774385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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