View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17610_low_4 (Length: 276)
Name: NF17610_low_4
Description: NF17610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17610_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 19007657 - 19007413
Alignment:
| Q |
16 |
aatatattaggatctattgttattgtttattg--aaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19007657 |
aatatattaggatctattgttattgtttattgtgaaatatgaagatgaaaaagttaatgagacattaatctaaacaagcttcgctatttgattttctaaa |
19007558 |
T |
|
| Q |
114 |
tttatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgccaatgcctaagaacc |
213 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19007557 |
tttgtgataacaggatttcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgtcaatgcctaagaacc |
19007458 |
T |
|
| Q |
214 |
aggtactcggatgaacactccaagggaacactgcacaaccgtaac |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19007457 |
aggtactcggatgaacactccaagggaacactgcacaaccgtaac |
19007413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 22621110 - 22620869
Alignment:
| Q |
16 |
aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaatt |
115 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22621110 |
aatatattaggctctattgttattgtttattgaaatatgaagatgaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatt |
22621011 |
T |
|
| Q |
116 |
tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgccaatgcctaagaaccag |
215 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |
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| T |
22621010 |
tatgataacaggatatcagtgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgtcaatgcctaaaaaccag |
22620911 |
T |
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| Q |
216 |
gtactcggatgaacactccaagggaacactgcacaaccgtaac |
258 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22620910 |
gtactcggatgaacactccaa-ggaacactgcacaaccgtaac |
22620869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 11233458 - 11233500
Alignment:
| Q |
216 |
gtactcggatgaacactccaagggaacactgcacaaccgtaac |
258 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11233458 |
gtactcggacgaacactccaagggaacactgcacaaccgtaac |
11233500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 20010997 - 20010792
Alignment:
| Q |
16 |
aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20010997 |
aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatt |
20010898 |
T |
|
| Q |
116 |
tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatgccaatgcctaagaaccag |
215 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |
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| T |
20010897 |
tatgataacaggatatcagtgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaagtataaatgtcaatgcctaaaaaccag |
20010798 |
T |
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| Q |
216 |
gtactc |
221 |
Q |
| |
|
|||||| |
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|
| T |
20010797 |
gtactc |
20010792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 25555832 - 25556013
Alignment:
| Q |
16 |
aatatattaggatctattgttattgtttattgaaatatgaagatgaaaaagctaatgagacattaatctaaacaagcttcgctatttgattttctaaatt |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25555832 |
aatatattaggatctattgttattgtttattgaaatatgaagaggaaaaagttaacgagacattaatctaaacaagcttcgctatttgattttctaaatt |
25555931 |
T |
|
| Q |
116 |
tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaaatataaatg |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25555932 |
tatgataacaggatatcaatgtcaatatttttctcttaacattccaatgttctctaacaaactttatcagtaagtataaatg |
25556013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 40934461 - 40934503
Alignment:
| Q |
216 |
gtactcggatgaacactccaagggaacactgcacaaccgtaac |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40934461 |
gtactcggatgaacactccaaggaaacactgcacaaccgtaac |
40934503 |
T |
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