View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17611_high_1 (Length: 242)

Name: NF17611_high_1
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17611_high_1
NF17611_high_1
[»] scaffold0356 (1 HSPs)
scaffold0356 (67-238)||(17433-17604)
[»] chr7 (8 HSPs)
chr7 (66-238)||(22844294-22844466)
chr7 (74-238)||(42232499-42232663)
chr7 (66-238)||(9000701-9000873)
chr7 (80-236)||(12785560-12785716)
chr7 (80-236)||(12780706-12780862)
chr7 (70-238)||(21069618-21069786)
chr7 (74-172)||(5828177-5828275)
chr7 (80-236)||(7037225-7037381)
[»] chr3 (10 HSPs)
chr3 (66-236)||(10968340-10968510)
chr3 (64-238)||(50410657-50410831)
chr3 (66-236)||(52918517-52918687)
chr3 (80-238)||(33276-33434)
chr3 (67-238)||(13530531-13530702)
chr3 (74-238)||(10111099-10111263)
chr3 (74-237)||(10000906-10001069)
chr3 (66-238)||(11369130-11369301)
chr3 (74-215)||(10238053-10238194)
chr3 (66-238)||(10039121-10039282)
[»] scaffold0118 (1 HSPs)
scaffold0118 (74-238)||(28275-28439)
[»] chr5 (13 HSPs)
chr5 (66-238)||(3690468-3690640)
chr5 (66-238)||(14192368-14192540)
chr5 (66-238)||(3876147-3876319)
chr5 (74-238)||(24629509-24629673)
chr5 (80-236)||(8428143-8428299)
chr5 (74-238)||(10025477-10025641)
chr5 (66-238)||(17871195-17871366)
chr5 (74-238)||(30346185-30346349)
chr5 (80-236)||(37373441-37373597)
chr5 (66-236)||(27881575-27881745)
chr5 (74-238)||(25542349-25542513)
chr5 (67-230)||(37261795-37261958)
chr5 (66-238)||(39883674-39883838)
[»] scaffold0262 (1 HSPs)
scaffold0262 (74-238)||(19504-19668)
[»] chr8 (5 HSPs)
chr8 (80-236)||(25218123-25218279)
chr8 (74-238)||(21113300-21113464)
chr8 (80-236)||(30325980-30326136)
chr8 (81-217)||(7822344-7822480)
chr8 (82-236)||(25208605-25208759)
[»] chr6 (5 HSPs)
chr6 (66-238)||(30881817-30881988)
chr6 (66-238)||(12517765-12517937)
chr6 (124-238)||(10188571-10188685)
chr6 (131-238)||(2200454-2200561)
chr6 (66-135)||(2201838-2201907)
[»] chr4 (6 HSPs)
chr4 (80-236)||(35856412-35856568)
chr4 (74-238)||(55558679-55558843)
chr4 (81-236)||(13337741-13337896)
chr4 (81-236)||(13344441-13344596)
chr4 (67-238)||(49710664-49710835)
chr4 (81-236)||(49786410-49786565)
[»] chr2 (11 HSPs)
chr2 (66-238)||(35610144-35610315)
chr2 (66-238)||(27192980-27193152)
chr2 (66-238)||(27842794-27842966)
chr2 (80-236)||(41919755-41919911)
chr2 (66-238)||(24246316-24246486)
chr2 (74-238)||(24268626-24268790)
chr2 (80-236)||(28665754-28665910)
chr2 (80-236)||(37824588-37824744)
chr2 (66-219)||(21395861-21396014)
chr2 (66-230)||(27509865-27510029)
chr2 (124-238)||(17683469-17683583)
[»] chr1 (8 HSPs)
chr1 (74-238)||(52501076-52501240)
chr1 (80-230)||(6310558-6310708)
chr1 (66-238)||(16042516-16042688)
chr1 (66-220)||(2452690-2452845)
chr1 (66-238)||(36207706-36207878)
chr1 (64-238)||(2329655-2329829)
chr1 (80-236)||(37389710-37389866)
chr1 (66-209)||(48774920-48775063)
[»] scaffold1139 (1 HSPs)
scaffold1139 (66-238)||(1508-1680)
[»] scaffold0134 (1 HSPs)
scaffold0134 (74-238)||(4816-4980)
[»] scaffold0003 (2 HSPs)
scaffold0003 (66-238)||(183302-183474)
scaffold0003 (66-140)||(166024-166098)
[»] scaffold0002 (1 HSPs)
scaffold0002 (66-221)||(320909-321064)
[»] scaffold0090 (1 HSPs)
scaffold0090 (80-236)||(48518-48674)
[»] scaffold0073 (2 HSPs)
scaffold0073 (66-238)||(32423-32595)
scaffold0073 (80-236)||(256-412)
[»] scaffold0017 (1 HSPs)
scaffold0017 (74-238)||(187053-187215)
[»] scaffold0225 (1 HSPs)
scaffold0225 (74-230)||(13841-13997)
[»] scaffold0107 (1 HSPs)
scaffold0107 (66-238)||(42466-42638)
[»] scaffold0550 (1 HSPs)
scaffold0550 (66-238)||(124-300)


Alignment Details
Target: scaffold0356 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 17604 - 17433
Alignment:
Q  67 aaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17604 aaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcat 17505  T
Q  167 cccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17504 cccaaactattaactttgcagcacgcaccagttcttccctaggactatccttttccattgtaagcgatgatg 17433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 22844294 - 22844466
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22844294 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 22844393  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| |  || ||||||| ||||||||||||||||||||||| || ||||| |||||||    
T  22844394 tcccaaattatcaactttgctacatgcaccaggtcttccctaggactatccttttcaatcgtaagcgatgatg 22844466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 42232499 - 42232663
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||     
T  42232499 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcaatggagcctcatcccaaat 42232598  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  42232599 tatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 42232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 9000873 - 9000701
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9000873 aaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctca 9000774  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||||||||||  |||| |||||||    
T  9000773 tcccaaattatcaactttgcagcacgcatcaggtctgccctaggactatccttttccatcttaagcgatgatg 9000701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 12785716 - 12785560
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12785716 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 12785617  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| |||||| |||||| ||| ||| |||||||||||||||||| ||||| |||||    
T  12785616 ctttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 12785560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 12780862 - 12780706
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    ||||||||||||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12780862 cgtttaggggatcattcttggacatgatatcaaacaatgatcggacaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 12780763  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||||  |||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  12780762 ctttgtagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 12780706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 21069786 - 21069618
Alignment:
Q  70 ggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatccc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||  | ||||||||||||||| | |     
T  21069786 ggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgaccgatgaaatgcctcaaaacaccatcaatacatcattggagcctcgttcg 21069687  T
Q  170 aaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||| |||||| ||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  21069686 aaattatcaagtttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 21069618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 5828275 - 5828177
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaa 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5828275 taaactcgtttaggggatcattcttggacatgatatcacacattgatcgatcaactgcctcaaaacaccatcagtgcatcattggagcctcatcccaaa 5828177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 7037225 - 7037381
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||| ||||||||||||| ||||||||||||| | |||||| |||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  7037225 cgtttaagggatcattcttgaacatgatatcacgtaatgatcggtcaactacctcaaaacaccattggtgcatcattggagcctcaccccaaattatcaa 7037324  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||| |||  || ||| |||||||||||||||||||||| ||||| |||||    
T  7037325 ctttgcagcatgcattaggtctgccctaggactatccttttccatcgtaagcgatga 7037381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 10968510 - 10968340
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10968510 aaaaggtctaaaatcgtttaggggatcattcttggacctgatatcatgcattgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctca 10968411  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  10968410 tcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 10968340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 50410657 - 50410831
Alignment:
Q  64 cgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcct 163  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  50410657 cgaaaaggtataaactcgtttaggggatcattcttggacatgatatcacacattgatcggtcaactgcctcaaaacaccattggtgcatcattggagcct 50410756  T
Q  164 catcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||| |||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  50410757 catcacaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 50410831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 52918517 - 52918687
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52918517 aaaaggtctaaacttgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctca 52918616  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||||||| |||||||||| ||||||||||||| ||| |||||||| ||||||||||||| ||||| |||||    
T  52918617 tcccaaattatcaactttgcagcacgcaccaggtctaccctaggattatccttttccatcgtaagcgatga 52918687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 80 - 238
Target Start/End: Original strand, 33276 - 33434
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  33276 cgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcatcggagcctcatcccaaattatcaa 33375  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    || | ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  33376 ctatgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 33434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 13530531 - 13530702
Alignment:
Q  67 aaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcat 166  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||| ||||| ||||||| ||    
T  13530531 aaaggtctaaactcgtttaggggatcattcttggacatgatatgacgcattgatcggtcaactgtctcaaaacaccattggtgtatcatcggagccttat 13530630  T
Q  167 cccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||    
T  13530631 cccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttctatcgtaagcgatgatg 13530702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 10111099 - 10111263
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||     
T  10111099 taaactcgtttagggaatcattcttggacatgataccacacattgatcggtcaactgcctcaaaacaccatcagtgcatcattagagcctcatcccaaat 10111198  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||||| ||||| |||||||    
T  10111199 tatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagagatgatg 10111263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 237
Target Start/End: Original strand, 10000906 - 10001069
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||     
T  10000906 taaactcgtttagggaatcattcttggacatgataccacacattgatcggtcaactgcctcaaaacaccatcagtgcatcattagagcctcatcccaaat 10001005  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgat 237  Q
    |||||||||| ||||||||||||  ||| |||||||||||||||||||||| ||||| ||||||    
T  10001006 tatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagagatgat 10001069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 11369130 - 11369301
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  11369130 aaaaggtctaaactcgtataggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacaccatcggtgcatcattggagcctca 11369229  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| ||||||||||  |||| ||||||| || | |||||||||||||||||||||  |||| |||||||    
T  11369230 tcccaaattatcaactttgaagcatgcaccaggtc-tgcctaggactatccttttccatcttaagcgatgatg 11369301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 10238053 - 10238194
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||| ||||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||     
T  10238053 taaactcgtttagggaatcattcctggacatgataccacacattgatcggtcaactgcctcaaaacaccatcagtgcatcattagagcctcatcccaaat 10238152  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatc 215  Q
    |||||||||| ||||||||||||| ||| |||||||||||||    
T  10238153 tatcaactttgcagcacgcaccaggtctgccctaggactatc 10238194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 10039121 - 10039282
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||  |||||| |||||||| ||           |||||||||| ||    
T  10039121 aaaaggtctaaactcgtttaagggatcattcctagacatgatatcacgcattgatcagtcaacttcctcaaaagac-----------cattggagcccca 10039209  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||| ||| ||| ||||||||| ||| ||||| |||||||||| ||||  ||||| |||||||    
T  10039210 tcccaaattatcaattttacagtacgcaccaggtctgccctatgactatccttctccagcgtaagcgatgatg 10039282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 28439 - 28275
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||     
T  28439 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcaatggagcctcatcccaaat 28340  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  28339 tatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 28275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 3690468 - 3690640
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||||||||||    
T  3690468 aaaaggtctaaactcgtttaggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacaccatcggttcatcattggagcctca 3690567  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  3690568 tcccaaattatcaactttgcagcaggcaccaggtctgccctaggactatccttttccatcgtaagtgatgatg 3690640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 14192540 - 14192368
Alignment:
Q  66 aaaaggtctaaactcgtttagggg-atcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctc 164  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||    
T  14192540 aaaaggtctaaactcgtttagggggatcattcttggacatgatatcacgcattgatcggtcaattgcttcaaaacaccatcggtgca-cattggagcctc 14192442  T
Q  165 atcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  14192441 atcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagtgatgatg 14192368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 3876319 - 3876147
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||| ||||||| ||||||||||||||||    
T  3876319 aaaaggtctaaactcgtttaggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacatcatcggttcatcattggagcctca 3876220  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||| ||||||| ||| |||||||||||||||||||||| |||||||||||||    
T  3876219 tcccaaattatcaactttgcagcaggcaccaggtctgccctaggactatccttttccatcgtaagtgatgatg 3876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 24629673 - 24629509
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||     
T  24629673 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcggccaactgcctcaaaacaccatcagtgcatcaatggagcctcatcccaaat 24629574  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||    
T  24629573 tatcaactttgcagcacgcatcaggtcttccctaggactatccttttccatcgtaagcgatgatg 24629509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 8428299 - 8428143
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8428299 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 8428200  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  8428199 ctttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 8428143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 10025477 - 10025641
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||     
T  10025477 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcaatggagcctcatcccaaat 10025576  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| |||||||||| || ||| ||| |||||||||||||||||| ||||| |||||||    
T  10025577 tatcaactttgcagcacgcactaggtctgccccaggactatccttttccatcgtaagcgatgatg 10025641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 17871366 - 17871195
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17871366 aaaaggtctaaactcgtttaggggatcattcttggacatgatat-acgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 17871268  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    | ||| | |||||||||| |  || ||||||  |||||||||||||||||||||||||| ||||| |||||||    
T  17871267 ttccatattatcaacttttctacatgcaccatgtcttccctaggactatccttttccatcgtaagcgatgatg 17871195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 30346349 - 30346185
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||     
T  30346349 taaactcgtttaggggatcaatcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcaatggagtctcatcccaaat 30346250  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||    
T  30346249 tatcaactttgcagcacgcatcaggtctgccctaggactatccttttccatcgtaagtgatgatg 30346185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 37373441 - 37373597
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  37373441 cgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagtctcatcccaaattatcaa 37373540  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  37373541 ctttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 37373597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 27881575 - 27881745
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27881575 aaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctca 27881674  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||||||| |||||||||| ||||||||| ||| | | |||||||||||||||||||||| ||||| |||||    
T  27881675 tcccaaattatcaactttgcagcacgcatcaggtttgccctaggactatccttttccatcgtaagcgatga 27881745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 25542513 - 25542349
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||  |||     
T  25542513 taaactcgtttaggggatcattcttggacatgatatcacgcattaatcggtcaacttcctcaaaacaccatcagtgcatcattggagcctcatcttaaat 25542414  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  25542413 tatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 25542349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 67 - 230
Target Start/End: Original strand, 37261795 - 37261958
Alignment:
Q  67 aaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcat 166  Q
    |||||||||||||||||||  ||||||||| | ||||||||||| ||||||||||  |||||| |||||||||||||||  |||||||||||||||||||    
T  37261795 aaaggtctaaactcgtttaaaggatcattcctagacatgatatcgcgcattgatcagtcaacttcctcaaaacaccatcaatgcatcattggagcctcat 37261894  T
Q  167 cccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaag 230  Q
    |||||| |||||||||| ||||||||||||| |||  ||||||||||||||||||||| |||||    
T  37261895 cccaaattatcaactttacagcacgcaccaggtctgtcctaggactatccttttccatcgtaag 37261958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 39883674 - 39883838
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | ||||||||||||||||||||||||||        || |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39883674 aaaaggtttaagcgcgtttaggggatcattcttggacatg--------caatgatcggtcagctgcctcaaaacaccatcggtgcatcattggagcctca 39883765  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| ||||| |||| ||||||||||||| ||| || ||||||||||||||||||| ||||| |||||||    
T  39883766 tcccaaattatcagctttgcagcacgcaccaggtctgccttaggactatccttttccatcgtaagcgatgatg 39883838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 19504 - 19668
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||     
T  19504 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcattggagcctcatcccaaat 19603  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| |||  |||| |||||||||||||||| ||||| |||||||    
T  19604 tatcaactttgcagcacgcaccaggtctgacctaagactatccttttccatcgtaagcgatgatg 19668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 25218279 - 25218123
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25218279 cgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 25218180  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  25218179 ctttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 25218123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 21113464 - 21113300
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||     
T  21113464 taaacttgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgccgcaaaacaccatcagtgcatcaatggagcctcatcccaaat 21113365  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| |||  ||||||||||||||||||||| ||||| |||||||    
T  21113364 tatcaactttgcagcacgcaccaggtctgtcctaggactatccttttccatcgtaagcgatgatg 21113300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 30325980 - 30326136
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30325980 cgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 30326079  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||| ||||||| ||| ||||||||||||| |||||||| ||||| |||||    
T  30326080 ctttgcagcatgcaccaggtctgccctaggactatcattttccatcgtaagcgatga 30326136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 7822344 - 7822480
Alignment:
Q  81 gtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaac 180  Q
    ||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7822344 gtttaggggatcatttttggacatgatatcatgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaac 7822443  T
Q  181 tttccagcacgcaccagttcttccctaggactatcct 217  Q
    ||| ||||||||||||| ||| |||||||||||||||    
T  7822444 tttgcagcacgcaccaggtctgccctaggactatcct 7822480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 25208759 - 25208605
Alignment:
Q  82 tttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaact 181  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  25208759 tttaggggatcattcttggacatgatatcacacaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagtctcatcccaaattatcaact 25208660  T
Q  182 ttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||  |||||||| ||| ||| |||||||||| ||||||||||| ||||| |||||    
T  25208659 ttggagcacgcatcaggtctgccctaggactttccttttccatcgtaagcgatga 25208605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 30881817 - 30881988
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30881817 aaaaggtctaaactcgtttaggggatcattcttggacatgatat-acgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 30881915  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    | ||| | |||||||||| |  || ||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  30881916 ttccatattatcaacttttctacatgcaccaggtcttccctaggactatccttttccatcgtaagcgatgatg 30881988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 12517765 - 12517937
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | ||||||| ||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  12517765 aaaaggtttaagcgcgtttagaggatcattcttggacatgatatcacacaatgatcggtcagctgcctcaaaacaccatcggtgcatcattggagcctca 12517864  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||||||||||   || ||||||||||||| |||||||| ||||| |||||||    
T  12517865 tcccaaattatcaactttgcagcacgcaccatgcctgccctaggactatcattttccatcgtaagcgatgatg 12517937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 10188571 - 10188685
Alignment:
Q  124 tcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttcca 223  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||||    
T  10188571 tcaactgcctcaaaacaccattggtgcatcattagagcctcattccaaattatcaactttgcagcacgcaccaggtctgccctacgactatccttttcca 10188670  T
Q  224 ttgtaagtgatgatg 238  Q
    | ||||| |||||||    
T  10188671 tcgtaagcgatgatg 10188685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 2200561 - 2200454
Alignment:
Q  131 cctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaag 230  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  2200561 cctcaaaacactatcggtgcatcattggagcctcattccaaattatcaactttgcagcacgcaccaggtctcccctaggactatctttttccatcgtaag 2200462  T
Q  231 tgatgatg 238  Q
     |||||||    
T  2200461 cgatgatg 2200454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 2201907 - 2201838
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctca 135  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2201907 aaaaggtctaaactcgtttagggggtcattcttggacatgatatcacgctttgatcggtcaactgcctca 2201838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 35856412 - 35856568
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35856412 cgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 35856511  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  35856512 ctttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 35856568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 55558843 - 55558679
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||     
T  55558843 taaactcgtttaggggatcatttttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcaatggagcctcatcccaaat 55558744  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  55558743 tatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 55558679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 13337741 - 13337896
Alignment:
Q  81 gtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaac 180  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13337741 gtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaccaccatcggtgcatcattggagcctcatcccaaattatcaac 13337840  T
Q  181 tttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  13337841 tttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 13337896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 13344441 - 13344596
Alignment:
Q  81 gtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaac 180  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13344441 gtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaccaccatcggtgcatcattggagcctcatcccaaattatcaac 13344540  T
Q  181 tttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  13344541 tttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 13344596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 67 - 238
Target Start/End: Original strand, 49710664 - 49710835
Alignment:
Q  67 aaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcat 166  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  49710664 aaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcgatgcatcattggagcctcat 49710763  T
Q  167 cccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||| |||||||||| |||||||||| || ||| |||||||||||||||||| |||  |||| |||||||    
T  49710764 cccaaattatcaactttgcagcacgcacaaggtctgccctaggactatccttttgcatcttaagcgatgatg 49710835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 236
Target Start/End: Complemental strand, 49786565 - 49786410
Alignment:
Q  81 gtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaac 180  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49786565 gtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaac 49786466  T
Q  181 tttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    ||| |||||| |||||| ||| ||| |||||||||||||||||| ||||| |||||    
T  49786465 tttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 49786410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 35610144 - 35610315
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||||||||||| |||||||||||||    
T  35610144 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgtattgatcggtcaattgcttcaaaacaccatcggtgca-cattggagcctca 35610242  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||| |||||||||||||    
T  35610243 tcccaaattatcaactttgcagcacgcaccaggtctgccttaggactatccttttccatcgtaagtgatgatg 35610315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 27192980 - 27193152
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  27192980 aaaaggtctaaactcgtttaggggatcattcttgtacatgatataacgcattgatcggtcaactgcctcaaagcaccatcggtgcatcattggagcctca 27193079  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||| ||| ||||||||||||| ||  ||||||||||||||||||||||  |||| |||||||    
T  27193080 tcccaaattatcaattttgcagcacgcaccaggtcagccctaggactatccttttccatcataagcgatgatg 27193152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 27842794 - 27842966
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  27842794 aaaaggtctaaactcgtttaggggatcattcttgtacatgatataacgcattgatcggtcaactgcctcaaagcaccatcggtgcatcattggagcctca 27842893  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||| ||| ||||||||||||| ||  ||||||||||||||||||||||  |||| |||||||    
T  27842894 tcccaaattatcaattttgcagcacgcaccaggtcagccctaggactatccttttccatcataagcgatgatg 27842966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 41919911 - 41919755
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41919911 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 41919812  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  41919811 ctttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatga 41919755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 24246316 - 24246486
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||||    
T  24246316 aaaaggtctaaactcatttaggggatcattcttggacatgatatcacgtattgatcggtcaactgcctcaaaataccatcagtgcatcattggagcctca 24246415  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |  |||| |||||||||| ||||||||||||  ||| |||||||||||||||||||||| ||||| |||||||    
T  24246416 t--caaattatcaactttgcagcacgcaccaagtctgccctaggactatccttttccatcgtaagcgatgatg 24246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 24268790 - 24268626
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||     
T  24268790 taaacttgtttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcagtgcatcagtggagcctcatcccaaat 24268691  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||| ||||||| |||  |||||||||||| |||||||| ||||| |||||||    
T  24268690 tatcaactttgcagcatgcaccaggtctgtcctaggactatcattttccatcgtaagcgatgatg 24268626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 28665910 - 28665754
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28665910 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 28665811  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| |||||| |||||| ||| ||| |||||||||||||||||| ||||| |||||    
T  28665810 ctttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 28665754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 37824744 - 37824588
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37824744 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 37824645  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| |||||| |||||| ||| ||| |||||||||||||||||| ||||| |||||    
T  37824644 ctttgcagcacacaccaggtctgcccaaggactatccttttccatcgtaagcgatga 37824588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 21395861 - 21396014
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  21395861 aaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaacagcctcaaaacaccatcggtgcatcattggagcctca 21395960  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttt 219  Q
    ||||||| |||||||||| ||||||||||||  ||| |||||||||||||||||    
T  21395961 tcccaaattatcaactttgcagcacgcaccaagtctgccctaggactatccttt 21396014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 27509865 - 27510029
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  27509865 aaaatgtctaaactcatttaggggatcattcttggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcggtgcatcattgaagcctca 27509964  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaag 230  Q
    ||| ||| |||||||||| ||||| ||||||| ||| ||||||| || ||||||| ||| |||||    
T  27509965 tcctaaattatcaactttgcagcatgcaccagatctgccctaggtctgtccttttgcatcgtaag 27510029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 17683583 - 17683469
Alignment:
Q  124 tcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttcca 223  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||| ||||||||||||| ||| ||||| |||||||||||| ||    
T  17683583 tcaactgcctcaaaacaccattggtgcatcattagagcctcattccaaattatcaactttgcagcacgcaccaggtctgccctacgactatcctttttca 17683484  T
Q  224 ttgtaagtgatgatg 238  Q
    | ||||| |||||||    
T  17683483 tcgtaagcgatgatg 17683469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 52501076 - 52501240
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||     
T  52501076 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcggccaactgcctcaaaacaccatcagtgcatcaatggagcctcatcccaaat 52501175  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||    
T  52501176 tatcaactttgcagcacgcatcaggtcttccctaggactatccttttccatcgtaagcgatgatg 52501240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 6310708 - 6310558
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6310708 cgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 6310609  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaag 230  Q
    |||| ||||| ||| ||| ||| |||||||||||||||||||||| |||||    
T  6310608 ctttgcagcatgcatcaggtctgccctaggactatccttttccatcgtaag 6310558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 16042516 - 16042688
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||||| || |||||  ||| ||||||||||||||||||||||||||||| ||||||||    
T  16042516 aaaaggtttaagcgcgtttaggggatcattcttggacatgatatcacacaatgatcagtcagctgcctcaaaacaccatcggtgcatcatttgagcctca 16042615  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  16042616 tcccaaattatcaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 16042688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 2452845 - 2452690
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2452845 aaaagttctaaactcgtttaaggggtcattcttggacatgatatcacacattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 2452746  T
Q  166 tcccaaactatcaactttccagcacgcaccagttct-tccctaggactatcctttt 220  Q
    ||||||| ||||||| || ||||||||||||| |||  ||||||||||||||||||    
T  2452745 tcccaaattatcaacattacagcacgcaccaggtctgcccctaggactatcctttt 2452690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 36207706 - 36207878
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||  |||||||||||||||||||||  |||||| ||||||||||||    
T  36207706 aaaaggtctaaactcatttaagggatcattcttggacatggtatcacacattgatcagtcaactgcctcaaaacaccattagtgcatgattggagcctca 36207805  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| ||||||| || ||||||||||||| ||| |||||||||||| ||||||||| ||||| |||||||    
T  36207806 tcccaaattatcaacgttgcagcacgcaccaggtctaccctaggactattcttttccatcgtaagcgatgatg 36207878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 2329655 - 2329829
Alignment:
Q  64 cgaaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcct 163  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||  ||||||||||||| ||||||||||||||| ||    
T  2329655 cgaaaaggtctaaacttgtttaggggatcattcttggacatgatatcacacattgatcggtaaactttctcaaaacaccattggtgcatcattggagact 2329754  T
Q  164 catcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||   ||| |||||||||| |||||| |||||| ||| |||||||||| ||||||||||| ||||| |||||||    
T  2329755 cataaaaaattatcaactttgcagcacacaccaggtctgccctaggactgtccttttccatagtaagcgatgatg 2329829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 37389866 - 37389710
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||| |||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||  || |||||||||| ||||||||||| ||||||    
T  37389866 cgtttaagggatcattcttggccatgatatcacgcaatgattggtcaactgcctcaaaacaccatcattgtatcattggagtctcatcccaaattatcaa 37389767  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| |||| ||||||||||||||||||||||| |||||    
T  37389766 ctttgcagcacgcaccaggtctgccctgggactatccttttccattgtaagcgatga 37389710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 48775063 - 48774920
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  48775063 aaaaggtctaaactcgtttaagggatcattcttggatatgatatcatgcattgattggtcaactgcttcaaaacaccatcggtgcatcattggagcctca 48774964  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctagg 209  Q
    || |||| ||||||||||  |||||||||||| ||| |||||||    
T  48774963 tcacaaattatcaactttgaagcacgcaccaggtctgccctagg 48774920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1139 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold1139
Description:

Target: scaffold1139; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 1508 - 1680
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1508 aaaaggtctaaactcgtttaggggatcattattggacatgatatcacgcattgatcggtcaactgcctcaaaacaccatcggtgcatcatttgagcctca 1607  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
     || ||| ||| |||||| ||||||||||||| ||| |||||||||||||||||| |||| |||| |||||||    
T  1608 accaaaattattaactttgcagcacgcaccaggtctgccctaggactatcctttttcattttaagcgatgatg 1680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 4980 - 4816
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||     
T  4980 taaactcgtttaggggatcattcttggacatgatatcatgcattgatcggtcaactgcctcaaaacaccatcagtgcatcattggatcctcatcccaaat 4881  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||||| || ||||| |||||||    
T  4880 tatcaactttgcagcacgcaccaggtctgccctaggactatccttttctatcgtaagcgatgatg 4816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 183302 - 183474
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||| |    
T  183302 aaaaggtctaaactcgtttaggggatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaacaccatcggtacatcattggagcctaa 183401  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| ||| |||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| |||||||    
T  183402 tcccaaattattaactttgcagcacgcaccaggtctgccctaggactatccttttccatcgtaagcgatgatg 183474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 166024 - 166098
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaaca 140  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | |||||||||||||||||    
T  166024 aaaaggtctaaactcgtttaggtgatcattcttggatatgatatcatgcattgattggtcaactgcctcaaaaca 166098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 321064 - 320909
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  321064 aaaaggtctaaagttgtttaggggatcattcttggacatgatatcacccattgatcgatcaaatgcctcaaaacaccatcgatgtatcattggagcctca 320965  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttc 221  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||    
T  320964 tcccaaattatcaactttgcagcacgcaccaggtcttccctaggactatccttttc 320909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 80 - 236
Target Start/End: Complemental strand, 48674 - 48518
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48674 cgtttaggggatcattcttggacatgatatcaagcaatgatcggtcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaattatcaa 48575  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||||||||||| ||| ||| |||||||||||||||||| ||||| |||||    
T  48574 ctttgcagcacgcaccaggtctgcccaaggactatccttttccatcgtaagcgatga 48518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 32423 - 32595
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | |||||| |||||| | |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  32423 aaaaggtttaagcgcgtttacgggatcgtgcttggacatgatatcacgcaatgatcggtcagctgcctcaaaacaccatcggtgcatcattggagcctca 32522  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||    
T  32523 tcccaaattatcaactttgcagcacgcaccaggtctgccctaagactatccttttccattgtaagcgatgatg 32595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 256 - 412
Alignment:
Q  80 cgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaactatcaa 179  Q
    |||||| ||||||||||||| ||||||||||||| | |||||| |||||| |||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  256 cgtttaagggatcattcttgaacatgatatcacgtaatgatcggtcaactacctcaaaacaccattggtgcatcattggagcctcaccccaaattatcaa 355  T
Q  180 ctttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatga 236  Q
    |||| ||||| |||  || ||| |||||||||||||||||||||| ||||| |||||    
T  356 ctttgcagcatgcattaggtctgccctaggactatccttttccatcgtaagcgatga 412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 187053 - 187215
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||||||||||| ||||     
T  187053 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgttcaactacctcaaaacaccatgagtgcatcattggagcctcatctcaaat 187152  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    |||||||||| |||||||||||||   | |||||||||||||||||||||| ||||| |||||||    
T  187153 tatcaactttgcagcacgcaccag--gtgccctaggactatccttttccatcgtaagcgatgatg 187215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 74 - 230
Target Start/End: Complemental strand, 13997 - 13841
Alignment:
Q  74 taaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctcatcccaaac 173  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||     
T  13997 taaactcgtttaggggatcattcttggacatgatatcactcattgatctgtcaactgcctcaaaacaccattagtgcatcattggagcctcatcccaaat 13898  T
Q  174 tatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaag 230  Q
    ||||| |||| ||||||||||||| ||| ||||| |||||||||||||||| |||||    
T  13897 tatcatctttgcagcacgcaccaggtctgccctaagactatccttttccatcgtaag 13841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 42466 - 42638
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatgatatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagcctca 165  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  42466 aaaaggtttaagcacgtttaggggatcattcttggacatgatatcacgcaatgatcggtcaactgcctcaaaacaccatcagtgcatcattggagcctca 42565  T
Q  166 tcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    ||||||| |||||||||| ||||||||||||  | | ||||| ||||||||||||||||  |||| |||||||    
T  42566 tcccaaattatcaactttgcagcacgcaccaagtatgccctaagactatccttttccatcttaagcgatgatg 42638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0550 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0550
Description:

Target: scaffold0550; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 300 - 124
Alignment:
Q  66 aaaaggtctaaactcgtttaggggatcattcttggacatga----tatcacgcattgatcgatcaactgcctcaaaacaccatcggtgcatcattggagc 161  Q
    ||||||| ||| | ||||||||||||||| |||||||||||    ||||||||| |||||| ||| |||||||||||||||||  |||||||||||||||    
T  300 aaaaggtttaagcgcgtttaggggatcatgcttggacatgaatgatatcacgcaatgatcggtcagctgcctcaaaacaccattagtgcatcattggagc 201  T
Q  162 ctcatcccaaactatcaactttccagcacgcaccagttcttccctaggactatccttttccattgtaagtgatgatg 238  Q
    || | |||||| |||||||||| ||||||||||| | ||| ||||| |||||||||||||||| ||||| |||||||    
T  200 cttaacccaaattatcaactttgcagcacgcacctggtctgccctaagactatccttttccatcgtaagcgatgatg 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University