View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17611_high_12 (Length: 370)
Name: NF17611_high_12
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 83 - 342
Target Start/End: Original strand, 42978097 - 42978357
Alignment:
| Q |
83 |
aggttggtaaaacatcaggttctgctgatcctacagtaccagagacttcccctggtttattctttcgtcatgcggggcataggtatgatagcagatggtt |
182 |
Q |
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| T |
42978097 |
aggttggtaaaacatcaggttctgctgatactacagtaccagagacttcccctggtttattctttcgtcatgcagggcataggtatgatagcagatggtt |
42978196 |
T |
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| Q |
183 |
ttacacatgttcattta--tctttattcagttctttggaattcagcattatgttatatgctagtatgtttaagtggttggagtttttgttcccactggta |
280 |
Q |
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| T |
42978197 |
ttacacatgttcatttatctctttattcagttctttggaattcagcattatg-tatatgctagtatgtttaagtggttggagtttttgttcccactggta |
42978295 |
T |
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| Q |
281 |
ttgttgcatgtaacactgatggactcctttaataacgtttcaataccaatgaaaacaaatgt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978296 |
ttgttgcatgtaacactgatggactcctttaataacgtttcaataccaatgaaaacaaatgt |
42978357 |
T |
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