View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17611_high_16 (Length: 347)
Name: NF17611_high_16
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 14259761 - 14260024
Alignment:
| Q |
6 |
agtgagatgaaaatgtttttgatatattttagttatcgattcaaatgtattctctatgatcattttgtggatgacttgaacgattttatactatctggat |
105 |
Q |
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| T |
14259761 |
agtgatatgaaaatgtttttggtatattttagttatcgattcaaatgtattctccatgatcattttgtggatgacttgaacgattttatactatctggat |
14259860 |
T |
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| Q |
106 |
cttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagac |
205 |
Q |
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| T |
14259861 |
cttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatttcacaattttactaacaaaggttaagac |
14259960 |
T |
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| Q |
206 |
tcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggtgcttctacc |
269 |
Q |
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| T |
14259961 |
tcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggtgcttatacc |
14260024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 14265298 - 14265444
Alignment:
| Q |
14 |
gaaaatgtttttgatatattttagttatcgattcaaatgtattctctatgatcattttgtggatgacttgaacgattttatactatctggatcttctgac |
113 |
Q |
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| T |
14265298 |
gaaaatgtttatggtatattt-agttatcgattcaagtgtattcttcatgaccattttgtagatgacttgaccgattttatacta--tggatcttttgac |
14265394 |
T |
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| Q |
114 |
aatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
163 |
Q |
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| T |
14265395 |
aattcacgtgtggtggtttttcttggaaagatcgagttatggaaatgtaa |
14265444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 347
Target Start/End: Original strand, 14260093 - 14260176
Alignment:
| Q |
264 |
tctaccgtttatttttattataaacaatgtataaaaagatattannnnnnnnaaaaatctattcaatttattttttatattcag |
347 |
Q |
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| T |
14260093 |
tctaccgtttatttttattataaacaatgtataaaaagatattattttttataaaaatctattcaatttattttttatattcag |
14260176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 22146182 - 22146052
Alignment:
| Q |
33 |
tttagttatcgattcaaatgtattctctatgatcattttgtggatgacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagttt |
132 |
Q |
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| T |
22146182 |
tttagataccgattcaagtgtattctccatggccgttttgtggatgacttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttt |
22146083 |
T |
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| Q |
133 |
ttcttggaaagatcaagttatggaaaggtaa |
163 |
Q |
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| T |
22146082 |
tccttggaaagatcaaattatggtaaggtaa |
22146052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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