View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17611_high_18 (Length: 343)
Name: NF17611_high_18
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 30078975 - 30078688
Alignment:
| Q |
1 |
gtcaaacactcatactgcttcatcctattactaaatataacatcaacagcaaactgatttgtcgcataccaacccgtatccgagaaaaccccttcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30078975 |
gtcaaacactcatactgcttcatcctattactaaatataacatcaacagcaaactgatttgtcgcataccaacccgtatcggagaaaaccccttcaacat |
30078876 |
T |
|
| Q |
101 |
tctcaagtggcggcccaagaccagcattggtagtaaacttacacatattagtccaaagactcaaactcttacactccttcaacatatcctcattaaacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30078875 |
tctcaagtggcggcccaagaccagcattggtagtaaacttacacatattagtccaaagactcaaactcttacactccttcaacatatcctcattaaacct |
30078776 |
T |
|
| Q |
201 |
tgaaggaagatcatgcacgtaaatatacctccccccacaaggatcactcttattttcaccggttttcaatgctttcataaaaggaaaa |
288 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30078775 |
tgaaggaagatcatgcacataaatatacctccccccacaaggatcactcttattttcaccggttttcaacgctttcataaaaggaaaa |
30078688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 39486208 - 39486332
Alignment:
| Q |
37 |
ataacatcaacagcaaactgatttgtcgcataccaacccgtatccgagaaaaccccttcaacattctcaagtggcggcccaagaccagcattggtagtaa |
136 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||| ||||| |||||||| || || | || || |||||||| |||||||| ||||||||||||| |
|
|
| T |
39486208 |
ataacatcaacagcaaattgattagtagcataccaaccagtatcagagaaaactccgtcgatgttttcgagtggcggaccaagacctgcattggtagtaa |
39486307 |
T |
|
| Q |
137 |
acttacacatattagtccaaagact |
161 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
39486308 |
acttacacatgttcgtccaaagact |
39486332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University