View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17611_high_2 (Length: 497)
Name: NF17611_high_2
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_2 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 25 - 465
Target Start/End: Original strand, 34310 - 34762
Alignment:
| Q |
25 |
catcatcagattaatcgaaatagttaatacgtccctgaattttactaagtttaatcaatttagtctctttgtcaagtctcatcgttaatagtgtcaacat |
124 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
34310 |
catcctcagattaatcgaaatagttaatacgtccctgaattttaccaagttcaatcaatttagtctctctatcaagtctcatcgttaatagtgtcaacat |
34409 |
T |
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| Q |
125 |
gtcacgttaaacactgacgtggagtttcaaagtgtacagggacaaaattgttagaaaannnnnnnnnnnnnnnnnnnnnnnnaaataaaagtaattacaa |
224 |
Q |
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| T |
34410 |
gtcacgttaaacactgacgtggagtttcaaagtgtacagggacaaaattgttagaaaattttgatttttttaacttttttttaaataaaagtaattacaa |
34509 |
T |
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| Q |
225 |
atcgattcatgtattgtttattaaaaaccaaattaatccacgaatcatgtcactcactg------------atcctaatacaagtcataaacattcaacc |
312 |
Q |
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| T |
34510 |
atcgattcatgtattgtttattaaaaaccaaattaatccacgaatcatgtcactcactatcaaataaactaatcctaatacaagtcataaacattcaacc |
34609 |
T |
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| Q |
313 |
atcaatagaatcacaacccatattcacccaagaatcgttgcaagcgtttgtttcacgatacgaatgacaaattggatttatgtgattgtggtactacgta |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |
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| T |
34610 |
atcaatagaatcacaacccatattcacccaagaatcgttgcaagcgtttgtttcacgatatgaatgacaaattggatttatgtgattgtgttactaccta |
34709 |
T |
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| Q |
413 |
tatgaggattaattgcagccatatgaataaaggtcatgcagaaaaggaaaaac |
465 |
Q |
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| T |
34710 |
tatgagggttaattgcaaccatatgaataaaggtcatacagaaaaggaaaaac |
34762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 207 - 465
Target Start/End: Original strand, 10428441 - 10428712
Alignment:
| Q |
207 |
aaataaaagtaattacaaatcgattcatgtattgtttattaaaaaccaaattaatccacgaatcatgtcactcact------------gat-cctaatac |
293 |
Q |
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| T |
10428441 |
aaatgaaagtaattacaaatcgattcatgtattatttattaaaaaccaaattaatccccgaatcatgtcactcactatcaaataaactgatacctaatac |
10428540 |
T |
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| Q |
294 |
aagtcataaacattcaaccatcaatagaatcacaacccatattcacccaagaatcgttgcaagcgtttgtttcacgatacgaatgacaaattggatttat |
393 |
Q |
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| T |
10428541 |
aactcataaacattcaacaatcaatagaatcacaacccatattcacccaagaatcgttgcaagcgtttgtttcacgatatgaatgacaaattgaatttat |
10428640 |
T |
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| Q |
394 |
gtgattgtggtactacgtatatgaggattaattgcagccatatgaataaaggtcatgcagaaaaggaaaaac |
465 |
Q |
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| T |
10428641 |
gtgattgtgttactacgtatatgagggttaattgcaaccataagaataaaggtcatacagaaaaggaaaaac |
10428712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 10428257 - 10428377
Alignment:
| Q |
34 |
attaatcgaaatagttaatacgtccctgaattttactaagtttaatcaatttagtctctttgtcaagtctcatcgttaatagtgtcaacatgtcacgtta |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
10428257 |
attaatcgaaatagttaatacgtccctgaattttactaagttcaatcaatttagtctctctgtcaagtctcatcgttaatagtgccaacatgtcacgtta |
10428356 |
T |
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| Q |
134 |
aacactgacgtggagtttcaa |
154 |
Q |
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| T |
10428357 |
aacattgacgtggagtttcaa |
10428377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 7001332 - 7001232
Alignment:
| Q |
50 |
aatacgtccctgaattttactaagtttaatcaatttagtctctttgtcaagtctcatcgttaatagtgtcaacatgtcacgttaaacactgacgtggagt |
149 |
Q |
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| T |
7001332 |
aatacgttcctgaattttataaatgttaatcaatttagtctcttcatcaagtcccaccgttaagagtgttaatgtgtcacgttaagcgctgatgtggagt |
7001233 |
T |
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| Q |
150 |
t |
150 |
Q |
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| T |
7001232 |
t |
7001232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 26778574 - 26778637
Alignment:
| Q |
41 |
gaaatagttaatacgtccctgaattttactaagtttaatcaatttagtctctttgtcaagtctc |
104 |
Q |
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| T |
26778574 |
gaaatagttaatacgtccctgaattttataaacgtcaatcaatttagtctctccgtcaagtctc |
26778637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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