View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17611_high_23 (Length: 333)
Name: NF17611_high_23
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 318
Target Start/End: Complemental strand, 7543442 - 7543122
Alignment:
| Q |
2 |
aaatcatcatggctataagctcaaatcaataacattcagagtagactagaacttcggtgacaggtggaagtgctcgtagaaaaggattttagtgcggaag |
101 |
Q |
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| T |
7543442 |
aaatcatcatggctataagctcaaatcaataacattcagagtagactagaacttcggtgaccggtagaagtgctcgtaaaaaaggattttagtgcggaag |
7543343 |
T |
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| Q |
102 |
aagttgttttcttgacgtgacggaagacgttttttcgtttgggggagaaatcttnnnnnnnnnng-----ttagcactttaacgctcaaatcaatataag |
196 |
Q |
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| T |
7543342 |
aagttgttttct-gatgtgacggaagacgttttctcgttagggagagaaatcttaaaaaaaaaaaaaaaattagcactttaacgctcaagtcaatatacg |
7543244 |
T |
|
| Q |
197 |
attgaagagaagaaagtgtgcaaagagtggtaaaatgtgatagtgccttgagtgtggcgcaaagtcacttacatagttggggtcaatgtgatgacaagtc |
296 |
Q |
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| T |
7543243 |
attgaagagaagaaagtgtgcaaagagtggtaaaatgtgatagtaccttgagtgtgacgcaaagtcacttacatagttggggtcagtgtgatgacaagtc |
7543144 |
T |
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| Q |
297 |
atcttacgttatttcttagcat |
318 |
Q |
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|||||||||||||||||||||| |
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| T |
7543143 |
atcttacgttatttcttagcat |
7543122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 321
Target Start/End: Complemental strand, 22346178 - 22346141
Alignment:
| Q |
283 |
tgtgatgacaagtcatcttacgttatttcttagcatatt |
321 |
Q |
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| T |
22346178 |
tgtgatgacaagtcatcttacgtta-ttcttagcatatt |
22346141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 17351079 - 17351051
Alignment:
| Q |
281 |
aatgtgatgacaagtcatcttacgttatt |
309 |
Q |
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| T |
17351079 |
aatgtgatgacaagtcatcttacgttatt |
17351051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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