View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17611_high_28 (Length: 320)
Name: NF17611_high_28
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_28 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0019 (3 HSPs) |
| | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 27 - 320
Target Start/End: Original strand, 23426826 - 23427127
Alignment:
| Q |
27 |
tcatgtaagtatgacctcagccaaagaactcttacacctacacacactgg---------caagcagaatgatattcaattaagaagtatgagaaatccac |
117 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23426826 |
tcatggaagtatgacctcagcaaaagaactcttacacctacacacagtggaggtatttgcaagcaggatgatattcaattaagaagtatgagaaatccac |
23426925 |
T |
|
| Q |
118 |
aaccaaggaatcgacattagtagcaccaaacttagacaatcaacttgcaccnnnnnnnnnctctcgaaaagtatggttaaaggagaccacacatgaaagg |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23426926 |
aactaaggaatcgacattagtagcaccaaacttagacaatcaacttgcac-tttttttttctctcacaaagtatggttaaaggagaccacacatgaaagg |
23427024 |
T |
|
| Q |
218 |
gaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcggcaataagatcctatgttgtctaatagtcaaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
23427025 |
gaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttaatatcggtaataagatcctatgttggctaatagtcaaatt |
23427124 |
T |
|
| Q |
318 |
cca |
320 |
Q |
| |
|
||| |
|
|
| T |
23427125 |
cca |
23427127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 174664 - 174774
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||||||||| |||| |||||||| ||||| || ||||||| ||||| ||||||| |||||||| | |
|
|
| T |
174664 |
aaagtatgattaaaggagaccacccaagaaagagaagagagcctcttaacgagagagaacaagtttgcatgaggatgaaagtcattcttattagtatccg |
174763 |
T |
|
| Q |
285 |
caataagatcc |
295 |
Q |
| |
|
|||||| |||| |
|
|
| T |
174764 |
caataatatcc |
174774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 142544 - 142654
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
| |
|
|||||||| |||||||||||||| | ||||| ||||||||| |||| |||||||| ||||| || ||||||| ||||| ||||||| |||||||| | |
|
|
| T |
142544 |
aaagtatgattaaaggagaccaccaaagaaagagaagagagcctcttaacgagagagaacaagtttgcatgaggatgaaagtcattcttattagtatccg |
142643 |
T |
|
| Q |
285 |
caataagatcc |
295 |
Q |
| |
|
|||||| |||| |
|
|
| T |
142644 |
caataatatcc |
142654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 177309 - 177420
Alignment:
| Q |
185 |
aaagtatggttaaaggagac-cacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcg |
283 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||| |||||| || |||| | ||| || ||||| || ||||||| ||||| ||||||| |||||||| |
|
|
| T |
177309 |
aaagtatgattaaaggagaaacacacaagaaagagaagagtgcctcttaaagagggagaacaactttgcatgaggatgaaaatcattcttattagtatct |
177408 |
T |
|
| Q |
284 |
gcaataagatcc |
295 |
Q |
| |
|
|||||||||||| |
|
|
| T |
177409 |
gcaataagatcc |
177420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 320
Target Start/End: Complemental strand, 44923214 - 44923082
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
| |
|
|||||||| |||| |||||||| |||| ||| ||||| ||| | | | |||||||| ||||||| ||||||| ||||| ||||| || |||||||| |
|
|
| T |
44923214 |
aaagtatgactaaatgagaccacccatggaagagaagaaagctttctaatgagagaaagcaaagttgcatgaggatgaaaatcattttgtttagtatc-- |
44923117 |
T |
|
| Q |
285 |
caataagatcctatgttgtctaatagtcaaattcca |
320 |
Q |
| |
|
|||||||||| | ||||||||| ||||| |||||| |
|
|
| T |
44923116 |
-aataagatccgaagttgtctaagagtcagattcca |
44923082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 20012983 - 20012863
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
| |
|
|||||||| |||||||||||||| || ||||| ||||| ||| |||| |||||||| | ||| || ||| ||| ||||| ||||||| |||||||| |
|
|
| T |
20012983 |
aaagtatgattaaaggagaccacccaagaaagagaagaaagcctcttaacgagagagagcaagtttgcataaggatgaaagtcattcttattagtatcca |
20012884 |
T |
|
| Q |
285 |
caataagatcctatgttgtct |
305 |
Q |
| |
|
|||||| |||| | ||||||| |
|
|
| T |
20012883 |
caataatatccaaagttgtct |
20012863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 293
Target Start/End: Original strand, 4415060 - 4415168
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||||| || | | ||||||||||||| ||||||| || ||||| || ||||| ||| |||| | |
|
|
| T |
4415060 |
aaagtatgattaaaggagaccacccaaagaaaagaagagagcttcctaatgagagaaaacaaatttccatgtggatgaaagtcgttctgattaatatccg |
4415159 |
T |
|
| Q |
285 |
caataagat |
293 |
Q |
| |
|
||||||||| |
|
|
| T |
4415160 |
caataagat |
4415168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 16436984 - 16437036
Alignment:
| Q |
110 |
aaatccacaac--caaggaatcgacattagtagcaccaaacttagacaatcaa |
160 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
16436984 |
aaatccacaacttcaagtaatcgatattagtagcaccaaacttagccaatcaa |
16437036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 40698462 - 40698572
Alignment:
| Q |
185 |
aaagtatggttaaaggagaccacacatgaaagggaagagagcatcttgacgagagaaaacaaagttccatgagggtgaaattcattctgcttagtatcgg |
284 |
Q |
| |
|
|||||||| |||| |||||||| |||| ||| ||||| ||| || | | |||||||| ||||||| ||||||| ||||| || || || |||||||| |
|
|
| T |
40698462 |
aaagtatgactaaatgagaccacccatggaagagaagaaagcttcataatgagagaaagcaaagttgcatgaggatgaaaatccttttgtttagtatcaa |
40698561 |
T |
|
| Q |
285 |
caataagatcc |
295 |
Q |
| |
|
||||||||||| |
|
|
| T |
40698562 |
caataagatcc |
40698572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University