View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17611_high_4 (Length: 417)

Name: NF17611_high_4
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17611_high_4
NF17611_high_4
[»] chr6 (1 HSPs)
chr6 (21-388)||(5951617-5951984)
[»] chr5 (2 HSPs)
chr5 (184-383)||(31952004-31952203)
chr5 (21-92)||(31951754-31951825)
[»] chr3 (3 HSPs)
chr3 (180-338)||(28188292-28188450)
chr3 (180-379)||(18077779-18077978)
chr3 (243-338)||(28153709-28153806)
[»] chr4 (1 HSPs)
chr4 (188-326)||(9907865-9908003)
[»] chr7 (4 HSPs)
chr7 (30-84)||(27092402-27092456)
chr7 (30-84)||(27185845-27185899)
chr7 (267-322)||(27092762-27092817)
chr7 (267-322)||(27185484-27185539)
[»] scaffold1163 (1 HSPs)
scaffold1163 (29-65)||(2254-2290)
[»] chr2 (2 HSPs)
chr2 (249-290)||(22396983-22397024)
chr2 (29-65)||(22396846-22396882)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 5951617 - 5951984
Alignment:
Q  21 acatcatcaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacgcagaattattaga 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5951617 acatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacacagaattattaga 5951716  T
Q  121 gcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtacctataacactgtgtgccggctgcgaaccac 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5951717 gcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtaccaataacactgtgtgccggctgcgaaccac 5951816  T
Q  221 gaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggagg 320  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951817 gaagaatcgctgctagacccaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggagg 5951916  T
Q  321 atcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951917 atcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgt 5951984  T

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Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 184 - 383
Target Start/End: Original strand, 31952004 - 31952203
Alignment:
Q  184 taagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaata 283  Q
    ||||||||||||||||| || || |  || |||||  | ||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  31952004 taagtacctataacactatgagctgattgagaaccttggagaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaata 31952103  T
Q  284 tgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttg 383  Q
    ||||||| || || ||||| ||||| ||||| || ||||||||  |||||| |||||| ||||| ||||| ||||||||  |||||||||||||||||||    
T  31952104 tgttatcacattttaggtccctatggattacaggtggatcatggccatgtaaataaactagaccttgtaaaatttggcgcgcccaactctttattgcttg 31952203  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 31951754 - 31951825
Alignment:
Q  21 acatcatcaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaa 92  Q
    |||||| ||||||||||||||||||| |||||||  || ||||||||||||||||| ||||||  |||||||    
T  31951754 acatcagcaagttcattgtattcttcctcgtacatttccggtgccatgaactccggtgttcctaacacaaaa 31951825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 180 - 338
Target Start/End: Complemental strand, 28188450 - 28188292
Alignment:
Q  180 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 279  Q
    ||||||||||| |||||||||||| |  || |||||| ||||||||||||||| |||||| | ||||||||||||   |||||||||||| |||||||||    
T  28188450 aaaataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaatttttgtttgtccaagatgtccattgaca 28188351  T
Q  280 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 338  Q
    | ||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||    
T  28188350 agtatgttatcacacttgaggtccctatgaattactggatgatcatgttcatgtagata 28188292  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 180 - 379
Target Start/End: Original strand, 18077779 - 18077978
Alignment:
Q  180 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 279  Q
    |||| |||||||||||||||||||||| ||||  |||||| | |||||| ||||||||| || || | || |||||||||||| |||| | |||||||||    
T  18077779 aaaacaagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagacttaagtaaacagttttcacttgtcaaagacgtccattgaca 18077878  T
Q  280 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattg 379  Q
    ||||   |||| |  |||||||  |||||||||||| | |||||||| |||||||||||||||||||| | ||| ||||| ||  |||||||||||||||    
T  18077879 aatactatatcacgtttgaggttcctatgaattacccgtggatcatgttcatgtagataaacaagaccctctaacatttgacgtgcccaactctttattg 18077978  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 338
Target Start/End: Complemental strand, 28153806 - 28153709
Alignment:
Q  243 gtcaccaattttcacttgtccaagatggccattgacaaatatgt--tatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 338  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||  |||| ||||||||||| |||||| |||| ||| ||||||| |||||||||||    
T  28153806 gtcaccaatttttgcttgtccaagatgtccattgacaagtatgttatatcacacttgaggtccctatgagttactggatgatcatgttcatgtagata 28153709  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 9908003 - 9907865
Alignment:
Q  188 tacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgtt 287  Q
    ||||||| |||||||||||  | || || ||||||||||| ||||| || ||||  |||||||| || || |  || | ||| ||||||||||| |||||    
T  9908003 tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt 9907904  T
Q  288 atcgcacttgaggtctctatgaattaccggaggatcatg 326  Q
    ||| ||||| ||||||||||| || || |||||||||||    
T  9907903 atcacactttaggtctctatgtatcacaggaggatcatg 9907865  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 27092402 - 27092456
Alignment:
Q  30 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 84  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27092402 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27092456  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 27185899 - 27185845
Alignment:
Q  30 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 84  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27185899 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27185845  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 27092762 - 27092817
Alignment:
Q  267 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 322  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27092762 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27092817  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 27185539 - 27185484
Alignment:
Q  267 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 322  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27185539 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27185484  T

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Target: scaffold1163 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 2254 - 2290
Alignment:
Q  29 aagttcattgtattcttcttcgtacaactctggtgcc 65  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2254 aagttcattgtattcttcttcgtacaattctggtgcc 2290  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 22396983 - 22397024
Alignment:
Q  249 aattttcacttgtccaagatggccattgacaaatatgttatc 290  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  22396983 aattttcacgtgtccaagatgtccattgacaaatgtgttatc 22397024  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 22396846 - 22396882
Alignment:
Q  29 aagttcattgtattcttcttcgtacaactctggtgcc 65  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22396846 aagttcattttattcttcttcgtacaattctggtgcc 22396882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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