View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17611_high_5 (Length: 414)
Name: NF17611_high_5
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_5 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 64 - 392
Target Start/End: Original strand, 23348413 - 23348741
Alignment:
| Q |
64 |
acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348413 |
acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
23348512 |
T |
|
| Q |
164 |
ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23348513 |
gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg |
23348612 |
T |
|
| Q |
264 |
acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgt |
363 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23348613 |
acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgt |
23348712 |
T |
|
| Q |
364 |
ttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
23348713 |
ttgaatgtctgagagtgaggtggaagatg |
23348741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 12742414 - 12742048
Alignment:
| Q |
28 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctat |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12742414 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat |
12742315 |
T |
|
| Q |
126 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12742314 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtag |
12742215 |
T |
|
| Q |
226 |
catcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagct |
325 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12742214 |
catcttcaacacaccttgctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagct |
12742115 |
T |
|
| Q |
326 |
gcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12742114 |
gcggcggcggagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatg |
12742048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 68 - 392
Target Start/End: Original strand, 18354744 - 18355074
Alignment:
| Q |
68 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18354744 |
atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
18354843 |
T |
|
| Q |
168 |
tggaataacaaagttagggaaaagttacaagaacaacgatttagg------atatatatagtagcatcttcaacacacctggctaatacgatgccgcaga |
261 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
18354844 |
tggaataacaaagttagggaaaagctacaggaacaacgatttaggatatatatatatatagtagcatcttcaacacacctgactgatacgacgccgcaga |
18354943 |
T |
|
| Q |
262 |
cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaatttt |
361 |
Q |
| |
|
| ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18354944 |
caacaacagcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaatttt |
18355043 |
T |
|
| Q |
362 |
gtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |
|
|
| T |
18355044 |
gtttgaatgtctgagagtgagatggaagatg |
18355074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 10328422 - 10328627
Alignment:
| Q |
28 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattt |
127 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10328422 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctattt |
10328521 |
T |
|
| Q |
128 |
aaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttagg--atatatatagtag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
10328522 |
aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagatacatgaacaacgatttaggatatatatatagtag |
10328621 |
T |
|
| Q |
226 |
catctt |
231 |
Q |
| |
|
|||||| |
|
|
| T |
10328622 |
catctt |
10328627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 10328626 - 10328658
Alignment:
| Q |
360 |
ttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
10328626 |
ttgtttgaatgtctgagagtgaggtggaagatg |
10328658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 1378 - 1014
Alignment:
| Q |
28 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctattt |
127 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1378 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctattt |
1279 |
T |
|
| Q |
128 |
aaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagca |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1278 |
aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagca |
1179 |
T |
|
| Q |
228 |
tcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgc |
327 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1178 |
tcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgc |
1079 |
T |
|
| Q |
328 |
ggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1078 |
ggcgacggagagagcggcaacggcagagaattttgtttaaatgtctgagagtgaggtggaagatg |
1014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 68 - 392
Target Start/End: Original strand, 43070819 - 43071143
Alignment:
| Q |
68 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43070819 |
atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
43070918 |
T |
|
| Q |
168 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43070919 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacgacaa |
43071018 |
T |
|
| Q |
268 |
cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttga |
367 |
Q |
| |
|
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43071019 |
cggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttga |
43071118 |
T |
|
| Q |
368 |
atgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
43071119 |
atgtctgagagtgaggtggaagatg |
43071143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 240 - 392
Target Start/End: Complemental strand, 1262601 - 1262449
Alignment:
| Q |
240 |
ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag |
339 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1262601 |
ctggctgatacgatgccgcatacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagaa |
1262502 |
T |
|
| Q |
340 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1262501 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatg |
1262449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 240 - 392
Target Start/End: Original strand, 48849391 - 48849543
Alignment:
| Q |
240 |
ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagag |
339 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
48849391 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgaaaggagagagctgcggcgacggagaa |
48849490 |
T |
|
| Q |
340 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48849491 |
agcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatg |
48849543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 53972682 - 53973047
Alignment:
| Q |
28 |
catcaatggacatattggtgtgtttgnnnnnnnnn-tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatt |
126 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
53972682 |
catcaatggacatattggtgtgtttgaaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatt |
53972781 |
T |
|
| Q |
127 |
taaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53972782 |
taaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagc |
53972881 |
T |
|
| Q |
227 |
atcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctg |
326 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972882 |
atcttcaacacacttggctgatacgatgccgcagacgacaacgacgaaagtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctg |
53972981 |
T |
|
| Q |
327 |
cggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
53972982 |
cggcgacggagagagcggcaacgacagagaattttgtttaaatgtctgagagtgaggtggaagatg |
53973047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 64 - 392
Target Start/End: Original strand, 19881544 - 19881872
Alignment:
| Q |
64 |
acacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881544 |
acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat |
19881643 |
T |
|
| Q |
164 |
ataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19881644 |
gtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacctggctgatacgatgccgcagacg |
19881743 |
T |
|
| Q |
264 |
acaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgt |
363 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19881744 |
acaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgaggacaggagagagctgcggtgacggagagagcggcaacgacagagaattttgt |
19881843 |
T |
|
| Q |
364 |
ttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
19881844 |
ttgaatgtctgagagtgaggtggaagatg |
19881872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 37983097 - 37982939
Alignment:
| Q |
63 |
tacacatgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983097 |
tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa |
37982998 |
T |
|
| Q |
163 |
tataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatata |
221 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37982997 |
tgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatata |
37982939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 213 - 392
Target Start/End: Complemental strand, 37982891 - 37982712
Alignment:
| Q |
213 |
atatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacg |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
37982891 |
atatatatattagcatcttcaacacacctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacg |
37982792 |
T |
|
| Q |
313 |
acaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37982791 |
ataggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgagagtgaggtggaagatg |
37982712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 330
Target Start/End: Complemental strand, 31685575 - 31685485
Alignment:
| Q |
240 |
ctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggc |
330 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31685575 |
ctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgatatcattggtgaagggcgacgacaggagagagctgcggc |
31685485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 31685489 - 31685438
Alignment:
| Q |
341 |
gcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31685489 |
gcggcaacggcatataattttgtttgaatgtctgagagtgaggtggaagatg |
31685438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 17682246 - 17682201
Alignment:
| Q |
262 |
cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg |
307 |
Q |
| |
|
|||||||| | ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
17682246 |
cgacaacggcaaaggtgatgtcggaatcgagagcattggtgaaggg |
17682201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 19766488 - 19766443
Alignment:
| Q |
262 |
cgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaaggg |
307 |
Q |
| |
|
|||||||| ||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
19766488 |
cgacaacggcgaaggtgatgtcggaatctagagcattggtgaaggg |
19766443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 68 - 392
Target Start/End: Complemental strand, 9044486 - 9044162
Alignment:
| Q |
68 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9044486 |
atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
9044387 |
T |
|
| Q |
168 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
9044386 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacacttggctgatacgatgctgcagacgacaa |
9044287 |
T |
|
| Q |
268 |
cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttga |
367 |
Q |
| |
|
|| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9044286 |
cgacgaaggtgatgtcgaaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacggagagagcggcaacggcagagaattttgtttga |
9044187 |
T |
|
| Q |
368 |
atgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
9044186 |
atgtctgagagtgaggtggaagatg |
9044162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 7472880 - 7473250
Alignment:
| Q |
28 |
catcaatggacatattggtgtgtttgnnnnnnnnntacacat--gattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctat |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7472880 |
catcaatggacatattggtgtgtttgaaaaaaaaatacacatatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctat |
7472979 |
T |
|
| Q |
126 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttagggaaaagttacaagaacaacgatttaggatat----atata |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
7472980 |
ttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatatata |
7473079 |
T |
|
| Q |
222 |
gtagcatcttcaacacacctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagag |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473080 |
gtagcatcttcaacacacctggctgatacgatgccgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagag |
7473179 |
T |
|
| Q |
322 |
agctgcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7473180 |
agctgcggcgacggagagagcgacaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatg |
7473250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 68 - 392
Target Start/End: Original strand, 30441983 - 30442307
Alignment:
| Q |
68 |
atgattttaaagtatcaatcaatttattaatagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataa |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30441983 |
atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa |
30442082 |
T |
|
| Q |
168 |
tggaataacaaagttagggaaaagttacaagaacaacgatttaggatatatatagtagcatcttcaacacacctggctaatacgatgccgcagacgacaa |
267 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
30442083 |
tggaataacaaagttagggaaaagttacaggaacaacgatttaggatatatatagtagcatcttcaacacatatggctgatacgatgccgcagacgacaa |
30442182 |
T |
|
| Q |
268 |
cgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttga |
367 |
Q |
| |
|
|| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
30442183 |
cggccaaggtgatgtcggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcaacggagagagcggcaacgacagagaattttgtttga |
30442282 |
T |
|
| Q |
368 |
atgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
30442283 |
atgtctgagagtgaggtggaagatg |
30442307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
| Q |
102 |
ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatataatggaataacaaagttag |
184 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| |||||| | ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
40163996 |
ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag |
40163917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 239 - 392
Target Start/End: Complemental strand, 35574 - 35421
Alignment:
| Q |
239 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
338 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| |||| |
|
|
| T |
35574 |
cctggctgatacgatgccgcaaacgacaacggcgaaggtgatgtcagaatcgagagcatcggtcaaaggcgacgacaggagagagctgcggcgacggaga |
35475 |
T |
|
| Q |
339 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35474 |
gagcagcaacggcagagaattttgtttgaatgtctgagagtgaggtggaagatg |
35421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 14677630 - 14677783
Alignment:
| Q |
239 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
338 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
14677630 |
cctggctgatacgatgctgcagacgacaacggcgaaggtgatgtcggaatcgagagcattggtgaagggtgacgataggagagagctgcggcgacggaga |
14677729 |
T |
|
| Q |
339 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14677730 |
gagcggcaacggcagaggattttgtttgaatgtctgagagtgaggtggaagatg |
14677783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 247 - 392
Target Start/End: Original strand, 31100488 - 31100633
Alignment:
| Q |
247 |
atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggca |
346 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
|
|
| T |
31100488 |
atacgatgccacagacgacaacggcgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagttgcggcgacggagagagtggcg |
31100587 |
T |
|
| Q |
347 |
acggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31100588 |
acggcaaagaattttgtttgaatgtctgagagtgaggtggaagatg |
31100633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 247 - 392
Target Start/End: Complemental strand, 5658261 - 5658131
Alignment:
| Q |
247 |
atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagagagagcggca |
346 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5658261 |
atacgatgccacagacgacaacggcgaaggtgatgttggaatcaagagcattggtgaagggcgacgacaggagagagctgcggcg--------------- |
5658177 |
T |
|
| Q |
347 |
acggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5658176 |
acggcaaagaattttgtttgaatgtctgagagtgaggtggaagatg |
5658131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 33688978 - 33689060
Alignment:
| Q |
311 |
cgacaggagagagctgcggcgacagagagagcggcaacggcagagaa-ttttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| | || |||||| | |||||||||||||| ||||||||||||| |||| |
|
|
| T |
33688978 |
cgacatgagagagctgcggcgacggagagagcggcgatgggagagaagtcttgtttgaatgtctaagagtgaggtggaagatg |
33689060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 29862969 - 29863122
Alignment:
| Q |
239 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
338 |
Q |
| |
|
||||||| ||||||||||||||| ||||||| | || |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29862969 |
cctggctgatacgatgccgcagatgacaacggcaaaagtgatgtcggaatcgagagcatcggtgaagggcgacgacaggagagagctgcggcgacggaga |
29863068 |
T |
|
| Q |
339 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29863069 |
gagcggcagcgacagagaattttgtttgaatgtctgagagtgaggtggaagatg |
29863122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 239 - 392
Target Start/End: Original strand, 11242 - 11395
Alignment:
| Q |
239 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgacagaga |
338 |
Q |
| |
|
||||||| || | |||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11242 |
cctggctgatgcaatgccgcagacgacaacggcgaaggtgatgtcggattcgagagcattggtgaagggcgacgacaagagagagctgcggcgacggaga |
11341 |
T |
|
| Q |
339 |
gagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||| || || ||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
11342 |
gagcggtgacaacaaagaattttgtttgaatgtctgggagtgaggtggaagatg |
11395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 306 - 392
Target Start/End: Original strand, 22000988 - 22001074
Alignment:
| Q |
306 |
ggcgacgacaggagagagctgcggcgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
22000988 |
ggcgacgacaggagagagctgcggcgacggagagagcggcaacgacagagaattttgtttgaatgtctgaaagtgaggtggaagatg |
22001074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 33045062 - 33045148
Alignment:
| Q |
247 |
atacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac |
333 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33045062 |
atacgatgccgcagacgacaacgacgaaggtgatgttggaatcgagagcattggtgaagggcgacgacaggagagagctgcggcgac |
33045148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 10092985 - 10092908
Alignment:
| Q |
239 |
cctggctaatacgatgccgcagacgacaacgtcgaaggtgaagtcagaatcgagagcattggtgaagggcgacgacag |
316 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10092985 |
cctggctgatacgatgccgcagacgacaacgacgaaggtgatgtcggaatcgagagcattggtgaagggcgacgacag |
10092908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 10092913 - 10092851
Alignment:
| Q |
330 |
cgacagagagagcggcaacggcagagaattttgtttgaatgtctgagagtgaggtggatgatg |
392 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10092913 |
cgacagagagagcggcgacgttagagaattttgtttgaatgtctgagagtgaggtggaagatg |
10092851 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 384
Target Start/End: Original strand, 33045154 - 33045184
Alignment:
| Q |
354 |
agaattttgtttgaatgtctgagagtgaggt |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33045154 |
agaattttgtttgaatgtctgagagtgaggt |
33045184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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