View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17611_high_9 (Length: 383)
Name: NF17611_high_9
Description: NF17611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17611_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 53 - 335
Target Start/End: Complemental strand, 1821058 - 1820775
Alignment:
| Q |
53 |
tatattagaaggaaggcgaagaaattttggtgttcagctcataaatcaaacctaaatcctttcaaataagtcatactttagtagagtttattaaccatta |
152 |
Q |
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| T |
1821058 |
tatattagaaggaaggcgaagaaattttggtgttcagctcataaatcaaacctaaatcctttcaaacaagtcatactttagtagagtttattaaccatta |
1820959 |
T |
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| Q |
153 |
agttcaatcatttacttatttaagaa-tattataatattaaaattttacgattccttctttatagatggacaaggcttcaatacttcgagaagcaattga |
251 |
Q |
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| T |
1820958 |
agttcaatcatttacttatttaagaaatattataatattaaaattttacgattccttctttatagatggacaaggcttcattacttcgagaagcgattga |
1820859 |
T |
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| Q |
252 |
ttatgtgaaacaacttaaagaacgtgttgaagaactcgagaaacaagacaaaaatgttgttgtcatgccggtgatggttctccg |
335 |
Q |
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| T |
1820858 |
ttatgtgaaacaacttaaagaacatgttgaagagctcgagaaacaagacaaaaatgttggtgtcacgccggtgatggttctccg |
1820775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 1841184 - 1841039
Alignment:
| Q |
190 |
taaaattttacgattccttctttatagatggacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgaagaactcg |
289 |
Q |
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| T |
1841184 |
taaaattttaatattccatttttatagacagacaaggcttcaatacttcgagaagcaattgattatgtgaaacaacttaaagaacgtgttgatgagctcg |
1841085 |
T |
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| Q |
290 |
agaaacaagacaaaaatgttgttgtcatgccggtgatggttctccg |
335 |
Q |
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| T |
1841084 |
agaaacaagacaaaaatgttggtgtcacgccggtgatggttctccg |
1841039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 383
Target Start/End: Complemental strand, 1841024 - 1840976
Alignment:
| Q |
335 |
gtggaatcaataattacaatgaagacacaaattctggtgaaacaagttg |
383 |
Q |
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| T |
1841024 |
gtggaaacaataattacaatgaagacacgaattcgagtgaaacaagttg |
1840976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 1820753 - 1820721
Alignment:
| Q |
351 |
caatgaagacacaaattctggtgaaacaagttg |
383 |
Q |
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| T |
1820753 |
caatgaatacacaaattctggtgaaacaagttg |
1820721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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