View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17612_low_2 (Length: 281)
Name: NF17612_low_2
Description: NF17612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17612_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 34090260 - 34090531
Alignment:
| Q |
1 |
cagaagaatatgagaatcagcaaagcaatcagccctacccaaaaaaccccataataaattgtgatacgataaaaggttccatcaa-gtgggttcaatatc |
99 |
Q |
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| T |
34090260 |
cagaagaatatgagaatcagcaaagcaatcagccctacccaaaaaatcccataataaattgtgatacgataaaaggttccatcaacgtgggttcaatatc |
34090359 |
T |
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| Q |
100 |
atccaaatagaaatcacatatgcaccagctgtgcaaaacactgagagacacgttacaattatgaggaaccacataacaaacttgttacgaaggggaaatc |
199 |
Q |
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| T |
34090360 |
atccaaatagaaatcacatatgcaccagctgtgcaaaacactgagagacacgttacaattatgaggaaccacataacaaacttgttacgaaggggaaatc |
34090459 |
T |
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| Q |
200 |
cacatattaataatacaataattgtttgagaagcagagaaagatatagtacacaacagtaaaaacagttcat |
271 |
Q |
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| T |
34090460 |
cacatattaataatacaataattgtttgagaagcagagaaagatatagtacacaacagtaaaaacagttcat |
34090531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 34093369 - 34093504
Alignment:
| Q |
136 |
aacactgagagacacgttacaattatgaggaaccacataacaaacttgttacgaaggggaaatccacatattaataatacaataattgtttgagaagcag |
235 |
Q |
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| T |
34093369 |
aacaccgagagacacgttacaatcatgagtaaccacataacaaacttgttacgaaggggaaatccacatattagtaacacaattattgtttgagaagcag |
34093468 |
T |
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| Q |
236 |
agaaagatatagtacacaacagtaaaaacagttcat |
271 |
Q |
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| T |
34093469 |
agaaagatatagtacataacagtataaacatttcat |
34093504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 34092518 - 34092612
Alignment:
| Q |
151 |
gttacaattatgaggaaccacataacaaacttgttacgaaggggaaatccacatattaataatacaataattgtttgagaagcagagaaagatat |
245 |
Q |
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||||||||||| ||| ||| |||||||||||||||| |||| |||||||||||| || ||| ||||| ||||| ||| |||||||||||||||| |
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| T |
34092518 |
gttacaattataaggtacctcataacaaacttgttaagaagtggaaatccacatgctagtaacacaattattgtctgaaaagcagagaaagatat |
34092612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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