View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17613_low_1 (Length: 567)
Name: NF17613_low_1
Description: NF17613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17613_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 556
Target Start/End: Complemental strand, 38998115 - 38997612
Alignment:
| Q |
15 |
atatgattcatgaataatttgttaacaatgagcatggcatatatatcagtgaactttgtaacaagtaacaacttatagaaggtagaaaatatactttaag |
114 |
Q |
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| T |
38998115 |
atatgattcatgaataatttgttaacaatgagcatggcatatatatcagtgaactttgtaacaagtaacaacttatagaaggtagaaaatatactttaag |
38998016 |
T |
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| Q |
115 |
gtagagattcaacaattttatgatttcaccaatcaatatctcataagagctttacnnnnnnnncttattaacaaaacaatttgttaattgcagtgcttat |
214 |
Q |
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| T |
38998015 |
gtagaaattcaacaattttctgatttcaccaatcaatatctcataagagctttac----------tttt----------tttcttaattgcagagcttat |
38997936 |
T |
|
| Q |
215 |
tattgatagaatcatggttttaaattgcggtaacaaatggctaatgcctaatgcatctgcaatataaaggattttgagctgtgtgcaaggccacaatttc |
314 |
Q |
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| T |
38997935 |
tattgatagaatcatggttttaaattgcggtaacaaatggctaatgcctaatgcatctgcaatataaaggattttgagctgtgtgcaaggccacattttc |
38997836 |
T |
|
| Q |
315 |
tcgctggtctatattataaccgtaacagcaatttaaaactatggatataatcatgatacctctccaacaccaacgcgaaatgtaagtggcttgccacgat |
414 |
Q |
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| T |
38997835 |
tcgct------------------aacagcaatttaaaactatggatataatcatgatacctctccaacaccaacgcgaaatgtaagtggcttgccacgat |
38997754 |
T |
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| Q |
415 |
tgtagctactgtcgaaaacttttccattctccaatctccccacatagtgtgcctaacattaacataacggtcaagttaaacaccgggcaaagggaacaat |
514 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38997753 |
tgtagctgctgtcgaaaacttttccattctccaatctccccacatagtgtgcctaacattaacataacggtcaagttaaacaccggaaaaagggaacaat |
38997654 |
T |
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| Q |
515 |
attcgatataaatgttagttacaaagttagttagttgttcat |
556 |
Q |
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| T |
38997653 |
attcgatataaatgttagttacaaagttagttagttgttcat |
38997612 |
T |
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