View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17614_high_2 (Length: 391)
Name: NF17614_high_2
Description: NF17614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17614_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 38184674 - 38184794
Alignment:
| Q |
126 |
agaaagagttggaagttggaacataaagatctcattttcatgatcatggataattgaattcaatatccatgtgttagtacaaattaaaaagcagcaagta |
225 |
Q |
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| T |
38184674 |
agaaagagttggaagttggaacataaagatctcattttcatgatcatggataattgaattcaatatccatgtgttagtacaaattaaaaagcagcaagta |
38184773 |
T |
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| Q |
226 |
gctagtagctactacacttat |
246 |
Q |
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| T |
38184774 |
gctagtagctaccacacttat |
38184794 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 38184531 - 38184629
Alignment:
| Q |
1 |
aagataaatatatgttatttgaattgactcaccaaaactaagcacataggacctaaaattgtagataaggagctccaacttccaacttgagaaaagtgag |
100 |
Q |
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| T |
38184531 |
aagataaatata-gttatttgaattgatttaccaaaaccaaatacacaggacctaaaattgtagaaaaggagttccaacttccaacttgagaaaagtgag |
38184629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 38184853 - 38184920
Alignment:
| Q |
308 |
gtatcttagtcatggtaagaacgaagagtagctccacaaaaggtgcaaacaatggctttccaagattt |
375 |
Q |
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| T |
38184853 |
gtatcttagtcatggtaagaacgaagagtagctccacaaaaggtacaaacgatggctttccaagattt |
38184920 |
T |
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