View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17614_low_1 (Length: 547)
Name: NF17614_low_1
Description: NF17614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17614_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 537
Target Start/End: Original strand, 2087319 - 2087838
Alignment:
| Q |
20 |
ttaccgcattcattacatcaccatttttgttgtcaaaatctactacgattgtgtgcaattcagtttaatggtctcccattgattgnnnnnnnnnnnnnnn |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2087319 |
ttaccacattcattacatcaccatttttgttgtcaaaatctactacgattgtgtgcaattcagtttaatggtctcccattgattgaaaaaattaattaaa |
2087418 |
T |
|
| Q |
120 |
nnnntgtattgttatattcaattttgattgatttcttttttctcctcgaatcttcacgaccatcctccctccccatttaaaaagattaattaaactttgt |
219 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2087419 |
aaaatgtattgttgtattcaattttgattgatttcttttttctcctcgaatcttcacgaccatcctccctccccatttaaaaagattaattaaactttgt |
2087518 |
T |
|
| Q |
220 |
gattatactcttgcttttcctctaccatccttcaaaactgattcccctcaatctccactaaactcttctcattatgcagcctcaaaaccatcacctcctt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
2087519 |
gattatactcttgcttttcctctaccatccttcaaaattgattcccctcaatctccactgaactcttctcattatggagcctcaaaaccatcacctcctt |
2087618 |
T |
|
| Q |
320 |
cgtagcggtagaagccgctacacattctttctcgatctcagcacacacaacaacatacctctcccactccattttcacatatttcctcaacgacattata |
419 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2087619 |
cgtagcgatagaagccgctacacattctttctcgatctcagcacacacaacaacatatctctccctctccattttcacatatttcctcaacgacattata |
2087718 |
T |
|
| Q |
420 |
tcaaagaatatttgaaagtttcgag--annnnnnnnngttatggacctaaatatctctaattttcgtataagatacatgtgaatttgtaggctttgagaa |
517 |
Q |
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| T |
2087719 |
tcaaagaatatttgaaagttttgagaaaaaaatatttgttatggacctaaatatctctaattttcgtataagatacatgtgaatttgtaggctttgagaa |
2087818 |
T |
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| Q |
518 |
gaaaatatgaactccttcat |
537 |
Q |
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|||||||||||||||||||| |
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| T |
2087819 |
gaaaatatgaactccttcat |
2087838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 213 - 424
Target Start/End: Original strand, 2083996 - 2084213
Alignment:
| Q |
213 |
actttgtgattatactcttgcttttcctctaccatccttcaaaactgattcccctcaatctccactaaactcttctcattatgcagcctcaaaa------ |
306 |
Q |
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|||| ||||| ||||||||| | ||||| |||||||| | |||||||||| | |||||||| || ||||||||||||| ||||||||||||| |
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| T |
2083996 |
acttcgtgatcatactcttgtctctcctccaccatcctccgaaactgattcgcttcaatctcaaccgaactcttctcattctgcagcctcaaaatcattg |
2084095 |
T |
|
| Q |
307 |
ccatcacctccttcgtagcggtagaagccgctacacattctttctcgatctcagcacacacaacaacatacctctcccactccattttcacatatttcct |
406 |
Q |
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|||| |||||| | ||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||| |
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| T |
2084096 |
ccattgcctcctctgcagcactagaagccgctacacgttctttctcgatctcagcacacgcagcaacatacctctccctctccattttcaccaatttcct |
2084195 |
T |
|
| Q |
407 |
caacgacattatatcaaa |
424 |
Q |
| |
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| |||||||| |||||| |
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| T |
2084196 |
aagcgacattacatcaaa |
2084213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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