View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17614_low_2 (Length: 439)
Name: NF17614_low_2
Description: NF17614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17614_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 5112374 - 5111961
Alignment:
| Q |
13 |
cctgaggaattagaacaagaggttgagtcagaggaattgccagctgtcatttcagattcaaacaacagagttaggatggcaaattcagcttacaaagaaa |
112 |
Q |
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| T |
5112374 |
cctgaggaattagaacaagaggttgagtcagaggaattgccagctgtcatttcagattcaaacaacagagttaggatggcaaattcagcttacaaagaaa |
5112275 |
T |
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| Q |
113 |
tggtgggtcaaccagaatgtccttggcttgaaattcaatgtggttcatcatgcaagaggattagtggtgaggtaacattgcaactttctgattcttcaaa |
212 |
Q |
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| T |
5112274 |
tggtgggtcaaccagaatgtccttggcttgaaattcaatgtggttcatcatgcaagaggattagtggtgaggtaacattgcaactttctgattcttcaaa |
5112175 |
T |
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| Q |
213 |
tataccaatttcttcaaatggattttcttgttgggtgaggattgaatgggaaaataatggacaggagaaaaattgtgtgaatgctttttgtgatgttatc |
312 |
Q |
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| T |
5112174 |
tataccaatttcttcaaatggtttctcttgttgggtgaggattgaatgggaaaataatggacagaagaaaaattgtgtgaatgctttttgtgatgttgtc |
5112075 |
T |
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| Q |
313 |
aagttgtgttgtgatcaatcaagggactatgttttcacttggaggtttcatactcgttctagggaagcttctcaatccagttgcaatgcttgaaaattga |
412 |
Q |
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| T |
5112074 |
aagttgtgttgtgatcaatcaagggactatgttttcacttggaggtttcatactcgttctagggaagcttctcaatccagttgcaatgcttgaaaattga |
5111975 |
T |
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| Q |
413 |
aacttgcacatagt |
426 |
Q |
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| T |
5111974 |
aacttgcacatagt |
5111961 |
T |
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