View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17614_low_5 (Length: 271)
Name: NF17614_low_5
Description: NF17614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17614_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 11119693 - 11119442
Alignment:
| Q |
12 |
gtgagaagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaaggg |
111 |
Q |
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| T |
11119693 |
gtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaaggg |
11119594 |
T |
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| Q |
112 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
211 |
Q |
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| T |
11119593 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
11119494 |
T |
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| Q |
212 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
263 |
Q |
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| T |
11119493 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 39 - 244
Target Start/End: Complemental strand, 12206175 - 12205970
Alignment:
| Q |
39 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaa |
138 |
Q |
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| T |
12206175 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaa |
12206076 |
T |
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| Q |
139 |
tgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggct |
238 |
Q |
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| T |
12206075 |
tgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggct |
12205976 |
T |
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| Q |
239 |
ggggtt |
244 |
Q |
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| T |
12205975 |
ggggtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 32741389 - 32741144
Alignment:
| Q |
20 |
aagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtgg |
119 |
Q |
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| T |
32741389 |
aagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaagggtgtagtgg |
32741290 |
T |
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| Q |
120 |
cggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacag |
219 |
Q |
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| T |
32741289 |
cggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgctttgatgatag |
32741190 |
T |
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| Q |
220 |
tgaagaagagaggatggctggggttgatgataggtttgatgatgtc |
265 |
Q |
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| T |
32741189 |
tgaagaagagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
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