View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17614_low_6 (Length: 245)
Name: NF17614_low_6
Description: NF17614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17614_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17116283 - 17116050
Alignment:
| Q |
1 |
tcatcatctttctagtcaatcattattctcccttatgagaactccccaataatagttgttgattgaaaatatcaacccaaagctccattggctcttcatc |
100 |
Q |
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| T |
17116283 |
tcatcatctttctcctcaatcattattctcccttatgagaactccccaacaatagttgttgattggaaacatcaacccaaagctccattggctcttcatc |
17116184 |
T |
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| Q |
101 |
ttcacaaatacaaagaattagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcct |
200 |
Q |
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| T |
17116183 |
ttcacaaatacaaagaattagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcct |
17116084 |
T |
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| Q |
201 |
agcaatatagcctccactaggtaccaaatgatga |
234 |
Q |
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| T |
17116083 |
agcaatatagcctccattaggtaccaaatgatga |
17116050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 50071549 - 50071764
Alignment:
| Q |
19 |
atcattattctcccttatgagaactccccaataatagttgttgattgaaaatatcaacccaaagctccattggctcttcatcttcacaaatacaaagaat |
118 |
Q |
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| T |
50071549 |
atcattattctcccttatgagaactccccaacaatagttgttgattggaaatagcaacccaaagctccattggctcttcatcttcacaaatacaaagaat |
50071648 |
T |
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| Q |
119 |
tagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcctagcaatatagcctccact |
218 |
Q |
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| T |
50071649 |
tagaaattttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctagcagcctagcaatatatccttcatt |
50071748 |
T |
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| Q |
219 |
aggtaccaaatgatga |
234 |
Q |
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| T |
50071749 |
aggtaccgaatgatga |
50071764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 37347872 - 37347785
Alignment:
| Q |
32 |
cttatgagaactccccaataatagttgttgattgaaaatatcaacccaaagctccattggctcttcatcttcacaaatacaaagaatt |
119 |
Q |
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| T |
37347872 |
cttatcagaactccccaacaataattgctggttagaaagagcaacccaaaactccattggctcttcatcttcacaaatgcaaagaatt |
37347785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 48621658 - 48621612
Alignment:
| Q |
73 |
caacccaaagctccattggctcttcatcttcacaaatacaaagaatt |
119 |
Q |
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| T |
48621658 |
caaccaaaaactccattggctcttgatcttcacaaatgcaaagaatt |
48621612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 39220504 - 39220435
Alignment:
| Q |
125 |
ttttaccaatccacacatatatcgttgaaggaacatgaacaataaaaacaatacgagaatcaagagctag |
194 |
Q |
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| T |
39220504 |
ttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgctag |
39220435 |
T |
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