View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_11 (Length: 524)

Name: NF17615_high_11
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_11
NF17615_high_11
[»] chr4 (21 HSPs)
chr4 (14-508)||(31351420-31351914)
chr4 (146-264)||(9460163-9460278)
chr4 (146-264)||(13538246-13538362)
chr4 (146-256)||(35010382-35010490)
chr4 (146-256)||(50263989-50264096)
chr4 (146-254)||(35130612-35130718)
chr4 (146-256)||(38415494-38415602)
chr4 (146-264)||(42657503-42657619)
chr4 (147-264)||(28091320-28091435)
chr4 (159-264)||(49479470-49479573)
chr4 (147-256)||(45333451-45333560)
chr4 (147-256)||(45341141-45341250)
chr4 (146-260)||(54733272-54733383)
chr4 (147-256)||(26336848-26336957)
chr4 (177-256)||(10601898-10601975)
chr4 (163-264)||(7921602-7921701)
chr4 (146-224)||(55967781-55967859)
chr4 (160-252)||(3746390-3746479)
chr4 (177-224)||(2629613-2629660)
chr4 (177-221)||(11128751-11128795)
chr4 (183-211)||(16556488-16556516)
[»] chr5 (10 HSPs)
chr5 (147-264)||(30327657-30327772)
chr5 (159-264)||(24793488-24793591)
chr5 (159-264)||(28282349-28282452)
chr5 (146-264)||(43549066-43549182)
chr5 (146-261)||(43405998-43406111)
chr5 (148-250)||(32398219-32398319)
chr5 (179-256)||(8032893-8032968)
chr5 (146-264)||(15409153-15409269)
chr5 (177-211)||(8571827-8571861)
chr5 (161-250)||(31478693-31478780)
[»] scaffold0166 (1 HSPs)
scaffold0166 (159-264)||(35871-35974)
[»] chr8 (9 HSPs)
chr8 (146-264)||(42445755-42445871)
chr8 (150-254)||(28300092-28300194)
chr8 (146-264)||(12959708-12959824)
chr8 (177-256)||(15837171-15837248)
chr8 (146-264)||(13147735-13147850)
chr8 (177-211)||(40393352-40393386)
chr8 (223-256)||(19756427-19756460)
chr8 (223-263)||(24182628-24182668)
chr8 (185-221)||(44923317-44923353)
[»] chr3 (15 HSPs)
chr3 (146-264)||(38745284-38745400)
chr3 (176-256)||(41259952-41260030)
chr3 (146-264)||(21892514-21892629)
chr3 (177-256)||(32594596-32594670)
chr3 (159-256)||(9737575-9737670)
chr3 (161-261)||(36786566-36786666)
chr3 (147-261)||(33439978-33440090)
chr3 (146-264)||(51829548-51829663)
chr3 (140-250)||(21177040-21177147)
chr3 (146-264)||(54240605-54240721)
chr3 (146-247)||(17002900-17002996)
chr3 (146-265)||(55009523-55009640)
chr3 (223-261)||(11988925-11988963)
chr3 (146-223)||(34875652-34875729)
chr3 (159-192)||(49284975-49285008)
[»] chr7 (21 HSPs)
chr7 (146-264)||(9667222-9667338)
chr7 (147-256)||(23198524-23198630)
chr7 (148-256)||(23982018-23982124)
chr7 (146-264)||(27227255-27227371)
chr7 (142-224)||(36877001-36877083)
chr7 (146-261)||(27744580-27744692)
chr7 (153-256)||(37307667-37307768)
chr7 (146-264)||(32958490-32958606)
chr7 (176-264)||(47684478-47684564)
chr7 (146-206)||(38524880-38524940)
chr7 (149-256)||(41780464-41780568)
chr7 (173-256)||(45725122-45725203)
chr7 (161-251)||(13054611-13054699)
chr7 (159-264)||(25091175-25091277)
chr7 (146-264)||(44165878-44165994)
chr7 (223-264)||(7683454-7683495)
chr7 (223-257)||(39584252-39584286)
chr7 (223-264)||(40097907-40097948)
chr7 (147-207)||(30746009-30746068)
chr7 (177-209)||(45284823-45284855)
chr7 (141-205)||(45664673-45664737)
[»] chr2 (18 HSPs)
chr2 (146-264)||(34319806-34319922)
chr2 (158-261)||(14368410-14368511)
chr2 (159-256)||(8915578-8915673)
chr2 (159-264)||(37123570-37123673)
chr2 (146-261)||(31068887-31069000)
chr2 (146-254)||(9198932-9199037)
chr2 (146-207)||(3108168-3108229)
chr2 (179-253)||(44287825-44287897)
chr2 (146-246)||(9294131-9294228)
chr2 (223-264)||(20156980-20157021)
chr2 (152-261)||(13874446-13874554)
chr2 (152-261)||(14014571-14014679)
chr2 (146-264)||(34028098-34028206)
chr2 (156-249)||(9932020-9932111)
chr2 (146-216)||(32087372-32087442)
chr2 (179-224)||(21297422-21297467)
chr2 (177-209)||(3596284-3596316)
chr2 (185-225)||(33816404-33816444)
[»] chr1 (9 HSPs)
chr1 (147-257)||(35996980-35997088)
chr1 (149-256)||(8757273-8757378)
chr1 (223-257)||(2661631-2661665)
chr1 (146-224)||(7550013-7550091)
chr1 (146-196)||(50462183-50462233)
chr1 (146-214)||(48977437-48977505)
chr1 (223-264)||(1927613-1927654)
chr1 (177-209)||(10632728-10632760)
chr1 (185-225)||(14396481-14396521)
[»] chr6 (9 HSPs)
chr6 (159-264)||(7326322-7326425)
chr6 (146-256)||(6922633-6922741)
chr6 (146-256)||(7339497-7339604)
chr6 (146-260)||(12606651-12606763)
chr6 (146-256)||(5925580-5925690)
chr6 (159-256)||(8176925-8177020)
chr6 (146-224)||(20599421-20599499)
chr6 (146-183)||(11063320-11063357)
chr6 (227-264)||(12654488-12654525)
[»] scaffold0040 (1 HSPs)
scaffold0040 (146-261)||(58639-58750)
[»] scaffold0291 (1 HSPs)
scaffold0291 (176-264)||(7212-7298)
[»] scaffold0178 (1 HSPs)
scaffold0178 (203-255)||(9703-9753)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 508
Target Start/End: Complemental strand, 31351914 - 31351420
Alignment:
Q  14 aatattggcctataaaaataca-tttctgttaccagcattgtctatttttgttcttttgattcatttgagtt-aattactttcatcattgaatatcatct 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31351914 aatattggcctataaaaatacactttctgttaccagcattgtctatttttgttcttttgattcatttgagtttaattactttcatcattgaatatcatct 31351815  T
Q  112 caaagcaaattaaatttcacatgcaaaggatccagtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaa 211  Q
    ||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| ||| |    
T  31351814 caaagcaaattaaatttcacatgcaaaggattccgtaagtgtagctcagttggtagctaccagagataatttgtgcaggggtcggggttcgaactccgga 31351715  T
Q  212 ttccccatttctctccacacataatatgtgtgaatctagccactaaactacttcnnnnnnnnnnnnnnnntt-cacatgcaaaggtatatatttaatcac 310  Q
    || ||||||||||  |||||||||||||||||||||||||||||| |||||||                    |||||||||||||||||||||||||||    
T  31351714 tttcccatttctc--cacacataatatgtgtgaatctagccactagactacttgatcaaaaaaaaaaaaaaaacacatgcaaaggtatatatttaatcac 31351617  T
Q  311 aagtctttaattgtgccatatatgatatgaatatatagacagttacctaagttttcgctctcatgtcctcctatttgagggtaacaatgaacagtagaaa 410  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31351616 aagtctttaattgtgctatatatgatatgaatatatagacagttacctaaattttcgctctcatgtcctcctatttgagggtaacaatgaacagtagaaa 31351517  T
Q  411 ctaatgtgcagccaacagcttgcattgcacgtttacatcttaataactagtttgatatggagaacactcaacacccctcgttttataagagatcttct 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  31351516 ctaatgtgcagccaacagcttgcattgcacgtttacatcttaataattagtttgatatggagaa-actcaacacccctcgttttataagagatcttct 31351420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 9460163 - 9460278
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||| |||||||||||||||||||||||||||||||||||| | |||||||||||| || |||  ||||||||||  |||||||||||||| ||||||||    
T  9460163 gtaaatgtaacttagttggtagctatcagagataatttgtgta-gggtcggggttcaaatcccatattccccatt--tctccacacataatgtgtgtgaa 9460259  T
Q  246 tctagccactaaactactt 264  Q
    | |||||||||||||||||    
T  9460260 tatagccactaaactactt 9460278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 13538362 - 13538246
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||  || ||||||||||| |||| |||| |  |||||| ||||||| ||||||||    
T  13538362 gtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccact--tctccatacataatgtgtgtgaa 13538265  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||||| |||||||    
T  13538264 tctagccactagactactt 13538246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 35010490 - 35010382
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||| || || |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |||| |  |||||||||||||| ||| ||||    
T  35010490 gtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaactccggatttcccact--tctccacacataatgtgtatgaa 35010393  T
Q  246 tctagccacta 256  Q
    |||||||||||    
T  35010392 tctagccacta 35010382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 50264096 - 50263989
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||| ||||| ||||| |||| |||||||| |  ||||||||||| || ||||||||    
T  50264096 gtaagtgtaactcagttggtagcta-cagggataatttgtgcaggggccggggctcgaaacccggattccccact--tctccacacatgatgtgtgtgaa 50264000  T
Q  246 tctagccacta 256  Q
    |||||||||||    
T  50263999 tctagccacta 50263989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 35130718 - 35130612
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||  | |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |||| |  ||| ||||||| || ||||||||    
T  35130718 gtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaaccccggatttcccact--tcttcacacattatgtgtgtgaa 35130621  T
Q  246 tctagccac 254  Q
    |||||||||    
T  35130620 tctagccac 35130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 38415602 - 38415494
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||||||  |||||||||||||| |||| || |||||||||| ||||| |||||  ||| || ||||||| ||||||||    
T  38415602 gtaagtgtagctcagttggtagctatcaaggataatttgtgcagaggtcaggattcgaaccccaaattctccatt--tcttcatacataatgtgtgtgaa 38415505  T
Q  246 tctagccacta 256  Q
    |||||||||||    
T  38415504 tctagccacta 38415494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 42657503 - 42657619
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || ||||||||||||||||||||||||| |  ||||||||| |||||||||||  |||| ||| |  ||| |||||||||| ||||||||    
T  42657503 gtaagtgtagctcagttggtagctatcagagataatttatataggggtcggagttcgaaccccacattctccact--tcttcacacataatgtgtgtgaa 42657600  T
Q  246 tctagccactaaactactt 264  Q
    | || ||||||||||||||    
T  42657601 tttaaccactaaactactt 42657619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 28091435 - 28091320
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| || |||||||||||||||| |||||||| ||||||| | | ||||||||| || ||||||||| |  |||||||||||||| |||||||||    
T  28091435 taagtgtagctcagttggtagctatcagtgataatttatgcagggattgaggttcgaactccaaattccccact--tctccacacataatgtgtgtgaat 28091338  T
Q  247 ctagccactaaactactt 264  Q
    ||||| | || |||||||    
T  28091337 ctagcaattagactactt 28091320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 49479470 - 49479573
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    ||||||||||||||||| ||||||| || |||||| |||||||||| |||||||| || | |  |||||||||||||| |||||||||||| |||||| |    
T  49479470 agttggtagctatcagaaataatttatgtaggggtaggggttcgaatcccgaatttccaact--tctccacacataatgtgtgtgaatctaaccactaga 49479567  T
Q  259 ctactt 264  Q
    ||||||    
T  49479568 ctactt 49479573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 45333560 - 45333451
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| ||  ||||||| ||||||| ||||| || ||||| ||| ||||||| |||||||||||||||| |||||  |||| ||||| |||||||||    
T  45333560 taagtgtagctctgttggtaactatcagggataacttctgcagaggttggggttcaaaccccgaattccccacttctccacacatataatgtgtgtgaat 45333461  T
Q  247 ctagccacta 256  Q
    ||||||||||    
T  45333460 ctagccacta 45333451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 45341250 - 45341141
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| ||  ||||||| ||||||| ||||| || ||||| ||| ||||||| |||||||||||||||| |||||  |||| ||||| |||||||||    
T  45341250 taagtgtagctctgttggtaactatcagggataacttctgcagaggttggggttcaaaccccgaattccccacttctccacacatataatgtgtgtgaat 45341151  T
Q  247 ctagccacta 256  Q
    ||||||||||    
T  45341150 ctagccacta 45341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 54733383 - 54733272
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||| ||||| |||||||||||| ||| ||| |||||||||| ||| ||||||||||   || ||||| ||   ||||||||||||||| ||||||||    
T  54733383 gtaagtataactcagttggtagctaccag-gatcatttgtgcagtggttggggttcgaattacggattcctcac--ctctccacacataatgtgtgtgaa 54733287  T
Q  246 tctagccactaaact 260  Q
    |||||||||||||||    
T  54733286 tctagccactaaact 54733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 26336957 - 26336848
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| ||  ||||||| ||| ||| ||||| || ||||| ||| || |||| |||||||||||||||| |||||  |||| ||||| |||||||||    
T  26336957 taagtgtagctctgttggtaactaccagggataacttctgcagaggttggagttcaaaccccgaattccccagttctccacacatataatgtgtgtgaat 26336858  T
Q  247 ctagccacta 256  Q
    ||||||||||    
T  26336857 ctagccacta 26336848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 10601898 - 10601975
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||| |||| ||||||||||| |||||||  |||||||| ||||||  ||||||||||||||||||| | |||||||    
T  10601898 ataatttttgcaagggtcggggtttgaaccccagattccccacttctct--acacataatatgtgtgaatatggccacta 10601975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 7921602 - 7921701
Alignment:
Q  163 ggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaactac 262  Q
    ||||||| |||| |||||||||| ||  ||||||||||| ||| ||| ||||| || |||||  ||||||| || ||||||||| ||||||||| |||||    
T  7921602 ggtagctgtcagggataatttgtacaaaggtcggggttcaaacgccggattcctcacttctc--cacacatcatgtgtgtgaatttagccactagactac 7921699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 55967781 - 55967859
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctc 224  Q
    ||||||||| || | |||||| ||| ||  ||||||||||| ||||| |||||||||||||||| |||||||| |||||    
T  55967781 gtaagtgtagctcaattggtaactaccaaggataatttgtgtaggggccggggttcgaaccccggattccccacttctc 55967859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 3746479 - 3746390
Alignment:
Q  160 gttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagcc 252  Q
    ||||||||||| |||||||| | |||| |||||| | ||||||||||||| ||| ||||||  |||||||| ||||| ||||| |||||||||    
T  3746479 gttggtagctaccagagatattatgtgtaggggt-gaggttcgaaccccggatttcccatt--tctccacatataatgtgtgtaaatctagcc 3746390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 2629613 - 2629660
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaattccccatttctc 224  Q
    ||||||| |||||||||||||||||||||||||||  ||||| |||||    
T  2629613 ataatttatgcaggggtcggggttcgaaccccgaacaccccacttctc 2629660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 11128751 - 11128795
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaattccccattt 221  Q
    ||||||| ||||||||| ||||||||||||||||| | |||||||    
T  11128751 ataatttatgcaggggtaggggttcgaaccccgaacttcccattt 11128795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 16556488 - 16556516
Alignment:
Q  183 tgtgcaggggtcggggttcgaaccccgaa 211  Q
    |||||||||||||||||||||||||||||    
T  16556488 tgtgcaggggtcggggttcgaaccccgaa 16556516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 30327657 - 30327772
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| || ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |  ||||||||||||||||||||||||    
T  30327657 taagtgtagctcagttggtagctatcagagataatttatgcaggggccggggttcgaaccccgaattcgccact--tctccacacataatatgtgtgaat 30327754  T
Q  247 ctagccactaaactactt 264  Q
    ||||||||||||||||||    
T  30327755 ctagccactaaactactt 30327772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 24793488 - 24793591
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||  ||||||||| | ||||||||||||||||| |    
T  24793488 agttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctct--acacataatgtatgtgaatctagccactaga 24793585  T
Q  259 ctactt 264  Q
    ||||||    
T  24793586 ctactt 24793591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 28282349 - 28282452
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    ||||||||||||  |||||||||||||| |||||||| | ||| |||| || ||||| || |||||  ||||||||||||||||||||||| |||||| |    
T  28282349 agttggtagctactagagataatttgtggaggggtcgagattcaaacctcgtattcctcacttctc--cacacataatatgtgtgaatctaaccactaga 28282446  T
Q  259 ctactt 264  Q
    ||||||    
T  28282447 ctactt 28282452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 43549182 - 43549066
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || | ||||||| |||||||||||||||||| ||| |  | ||||| |||||||||| || || ||||| |||||||| |||||||||||    
T  43549182 gtaagtgtagctcaattggtagttatcagagataatttgtgtaggagcagaggttcaaaccccgaat-cctcacttctc-ccacacatgatatgtgtgaa 43549085  T
Q  246 tctagccactaaactactt 264  Q
    |||||||||||| ||||||    
T  43549084 tctagccactaagctactt 43549066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 43406111 - 43405998
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||| ||||||||||||||||| ||  ||| ||||||||| |  |||| ||| |  |||||||||||||| |||||||     
T  43406111 gtaagtgtagctcagttggtagctaccagagataatttgtgcaaggaccggagttcgaacctcagattctccact--tctccacacataatgtgtgtgag 43406014  T
Q  246 tctagccactaaacta 261  Q
    |||| |||||| ||||    
T  43406013 tctaaccactagacta 43405998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 32398219 - 32398319
Alignment:
Q  148 aagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatc 247  Q
    ||||||||||  ||| |||| |||||| |||| | |||||||| ||||||||||||||  || |||||||| |  |||||||||||||| | ||||||||    
T  32398219 aagtgtaactcggtttgtagttatcagggatattatgtgcaggagtcggggttcgaacaacgtattccccact--tctccacacataatgtatgtgaatc 32398316  T
Q  248 tag 250  Q
    |||    
T  32398317 tag 32398319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 8032893 - 8032968
Alignment:
Q  179 aatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||||||||||| ||| |||||||||| ||||| |||  ||||  |||||||||| ||||||||| |||||||||    
T  8032893 aatttgtgcaggggttgggattcgaaccccaaattctccacatctc--cacacataatgtgtgtgaatttagccacta 8032968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 15409153 - 15409269
Alignment:
Q  146 gtaagtgtaacttagttggtagcta-tcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtga 244  Q
    ||||||||| || |||||||||||| | || ||||||||||| | ||| ||||||| ||| |||  |||||||| |||| |  ||||||||| |||||||    
T  15409153 gtaagtgtagctcagttggtagctattaagggataatttgtgta-gggccggggtttgaatcccagattccccacttcttt--acacataatgtgtgtga 15409249  T
Q  245 atctagccactaaactactt 264  Q
    || ||||||||| |||||||    
T  15409250 atttagccactagactactt 15409269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 8571827 - 8571861
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaa 211  Q
    ||||||| |||||||||||||||||||||||||||    
T  8571827 ataatttatgcaggggtcggggttcgaaccccgaa 8571861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 31478780 - 31478693
Alignment:
Q  161 ttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctag 250  Q
    |||||||| | | ||||||||||||||| ||| ||| ||||||||  || |||| ||| ||||||  ||||||||| |||||||||||||    
T  31478780 ttggtagccaccggagataatttgtgcaagggccggagttcgaacttcggattctccacttctct--acacataatgtgtgtgaatctag 31478693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 35871 - 35974
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||||||||  ||||||||| | ||||||||||||||||| |    
T  35871 agttggtagctatcagagataatttgtgcaggggtcggggtccgaaccccagatttcccatttctct--acacataatgtatgtgaatctagccactaga 35968  T
Q  259 ctactt 264  Q
    ||||||    
T  35969 ctactt 35974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 42445755 - 42445871
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| |||| |||||||||| | |||||  ||| || |||  ||||||||| ||||||||    
T  42445755 gtaagtgtaatttaattggtagctatcagagataatttgtgcagcggtcagggttcgaactctgaattatccacttttct--acacataatgtgtgtgaa 42445852  T
Q  246 tctagccactaaactactt 264  Q
    |||||||||||||||||||    
T  42445853 tctagccactaaactactt 42445871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 150 - 254
Target Start/End: Original strand, 28300092 - 28300194
Alignment:
Q  150 gtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatcta 249  Q
    ||||| || |||||||||||| ||  ||||||||||||||||| |||||||||||||||| |||||||| |  |||||| ||||||| ||||||||||||    
T  28300092 gtgtagctcagttggtagctaccaatgataatttgtgcaggggccggggttcgaaccccggattccccact--tctccatacataatgtgtgtgaatcta 28300189  T
Q  250 gccac 254  Q
    |||||    
T  28300190 gccac 28300194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 12959708 - 12959824
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||||||| ||||| |||||||||||| ||||||||||||||  |||||||| |  | | | || ||||| ||||||||    
T  12959708 gtaagtgtagctcagttggtagctatcagggataacttgtgcaggggttggggttcgaaccccagattccccact--tattcgcatataatgtgtgtgaa 12959805  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||| || ||||||    
T  12959806 tctagccacgaagctactt 12959824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 15837171 - 15837248
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||||||||||||||||||||||||| | | ||||||||||  | |||||||||||| |||||||||| ||||||||    
T  15837171 ataatttgtgcaggggtcggggttcgaactctggattccccatt--tttccacacataatgtgtgtgaatccagccacta 15837248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 13147850 - 13147735
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||||| |||||||||||| ||| ||||||||||||| |   ||  ||||||||||| |||| | || |  ||| |||||||||| ||||||||    
T  13147850 gtaagtgtaactcagttggtagctaccagtgataatttgtgca-gaaccgaagttcgaaccccaaatttcacact--tcttcacacataatgtgtgtgaa 13147754  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||||| |||||||    
T  13147753 tctagccactagactactt 13147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 40393352 - 40393386
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaa 211  Q
    ||||||| |||||||||||||||||||||||||||    
T  40393352 ataatttatgcaggggtcggggttcgaaccccgaa 40393386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 19756460 - 19756427
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccacta 256  Q
    |||||||||||||| |||||||||||||||||||    
T  19756460 tctccacacataatgtgtgtgaatctagccacta 19756427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 24182668 - 24182628
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaaactact 263  Q
    |||||||||||||||| ||||||||||| |||||| |||||    
T  24182668 tctccacacataatatctgtgaatctagtcactaagctact 24182628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 44923353 - 44923317
Alignment:
Q  185 tgcaggggtcggggttcgaaccccgaattccccattt 221  Q
    ||||||||||||||||||||||||| | |||||||||    
T  44923353 tgcaggggtcggggttcgaaccccggactccccattt 44923317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 38745400 - 38745284
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||| |||| |||||||||| | || ||| |||||||||||||||||||||| |||||||||||||||||||| |  |||||||||| ||| ||||||||    
T  38745400 gtaaatgtagcttagttggtggttaccagggataatttgtgcaggggtcgggattcgaaccccgaattccccact--tctccacacaaaatgtgtgtgaa 38745303  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||||| |||||||    
T  38745302 tctagccactagactactt 38745284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 256
Target Start/End: Complemental strand, 41260030 - 41259952
Alignment:
Q  176 gataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||||||| ||||| |||||||||| |||||||||||||| |  |||||||||||||| |||||||||||||||||||    
T  41260030 gataatttgtgtaggggccggggttcgacccccgaattccccact--tctccacacataatgtgtgtgaatctagccacta 41259952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 21892629 - 21892514
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || ||||| || ||| |||||||||||| || |||| |||||||||||| ||| ||||||||| |  ||||||||| || ||||||||||    
T  21892629 gtaagtgtagctcagttgataactaccagagataatttatggagggatcggggttcgaa-cccaaattccccact--tctccacacttattatgtgtgaa 21892533  T
Q  246 tctagccactaaactactt 264  Q
    ||||||  |||||||||||    
T  21892532 tctagctgctaaactactt 21892514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 177 - 256
Target Start/End: Original strand, 32594596 - 32594670
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    |||||||||| || ||||||||||||||||||||||| ||||     ||||| |||||||||||||||||||||||||||    
T  32594596 ataatttgtgtagtggtcggggttcgaaccccgaatttccca-----ctccatacataatatgtgtgaatctagccacta 32594670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 9737670 - 9737575
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    |||||||||||| |||||||| | |||||||||||| ||||||||||| ||||||  | ||||||||  ||||||||| ||||||||| || ||||||    
T  9737670 agttggtagctaccagagatattatgtgcaggggtcagggttcgaacctcgaattttctatttctct--acacataatgtgtgtgaatataaccacta 9737575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 36786666 - 36786566
Alignment:
Q  161 ttggtagctatcagagataatttgtgcaggggtcgggg-ttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaac 259  Q
    ||||||||||  || |||||||| || |||||| |||| |||||||| || ||||||||  | ||||||||||||||||||||||||||||||||| |||    
T  36786666 ttggtagctaatagggataatttttgtaggggttgggggttcgaacctcggattccccaact-tctccacacataatatgtgtgaatctagccactgaac 36786568  T
Q  260 ta 261  Q
    ||    
T  36786567 ta 36786566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 33439978 - 33440090
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| || | ||||||||||||||| |||||||||| ||||||||||||| |||  |||||||  |||   || | |||||||||| |||||||||    
T  33439978 taagtgtagctcacttggtagctatcagaaataatttgtgtaggggtcggggtttgaattccgaattttcca--ccttttcacacataatgtgtgtgaat 33440075  T
Q  247 ctagccactaaacta 261  Q
    ||| |||||| ||||    
T  33440076 ctaaccactagacta 33440090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 51829663 - 51829548
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||| ||| ||| ||||||||||| |  || |||||||||||  ||||| || |||||  |||||||||| | ||||||    
T  51829663 gtaagtgtagctcagttggtagctaccag-gatcatttgtgcaggagctggtgttcgaaccccagattcctcacttctc--cacacataatgtatgtgaa 51829567  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||||| |||||||    
T  51829566 tctagccactatactactt 51829548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 21177147 - 21177040
Alignment:
Q  140 gatccagtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatg 239  Q
    ||||| |||||| || || |||||||||||| |||||| ||||||| || |||||   ||||||||| ||||||||||| |  |||||||||||||| ||    
T  21177147 gatcccgtaagtatacctcagttggtagctaccagagacaatttgtaca-gggtcaaagttcgaacctcgaattccccact--tctccacacataatgtg 21177051  T
Q  240 tgtgaatctag 250  Q
    ||| |||||||    
T  21177050 tgtaaatctag 21177040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 54240605 - 54240721
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||| |||| || |||||| ||||| ||  || ||| |||||||||||||||||||||||| || |||  ||| |||||  ||| |||||| ||||||||    
T  54240605 gtaaatgtagctcagttggcagctaccaaggacaatatgtgcaggggtcggggttcgaacctcggattttccacttctc--cacgcataatgtgtgtgaa 54240702  T
Q  246 tctagccactaaactactt 264  Q
    |||| |||||| |||||||    
T  54240703 tctaaccactagactactt 54240721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 17002900 - 17002996
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||| ||| || |||||||||||| ||| |||||||||| ||||||  ||||||||||   || |||||||| |  |||||||||||||| ||||||||    
T  17002900 gtaagcgtagctcagttggtagctaccagggataatttgtacaggggctggggttcgaa---cggattccccact--tctccacacataatgtgtgtgaa 17002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 55009523 - 55009640
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || | ||||||||||| || ||||||||||| || |  |||||||||||||||| ||| | || |  |||||| ||||||| ||||||||    
T  55009523 gtaagtgtagctcaattggtagctattagggataatttgtgtagagaccggggttcgaaccccggatttctcact--tctccatacataatgtgtgtgaa 55009620  T
Q  246 tctagccactaaactacttc 265  Q
    ||  | ||||| ||||||||    
T  55009621 tcgtgtcactagactacttc 55009640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 11988963 - 11988925
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaaacta 261  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  11988963 tctccacacataatgtgtgtgaatctagccactagacta 11988925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 34875729 - 34875652
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttct 223  Q
    |||||||||||| |||||||| |||||| ||||||| | ||||| || ||  ||||||||||| ||||| ||| ||||    
T  34875729 gtaagtgtaactcagttggtaactatcaaagataatatttgcagaggccgaagttcgaaccccaaattctccacttct 34875652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 49284975 - 49285008
Alignment:
Q  159 agttggtagctatcagagataatttgtgcagggg 192  Q
    |||||||||||| |||||||||||||||||||||    
T  49284975 agttggtagctaccagagataatttgtgcagggg 49285008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 9667338 - 9667222
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||||||||||||||||||| |||||  || ||||||||||| |||| |||| |  |||||| ||||||| ||||||||    
T  9667338 gtaagtgtagctcagttggtagctatcagagataatttgtgtaggggctggagttcgaaccccaaatttcccact--tctccatacataatgtgtgtgaa 9667241  T
Q  246 tctagccactaaactactt 264  Q
    || |||||||| |||||||    
T  9667240 tccagccactagactactt 9667222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 23198630 - 23198524
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| || ||||| |||||||||  |||||||||||||||||| ||||||| ||||||| |||||||| |  |||||||||||||| ||||| |||    
T  23198630 taagtgtagctcagttgatagctatcaaggataatttgtgcaggggttggggttcaaaccccg-attccccact--tctccacacataatgtgtgtaaat 23198534  T
Q  247 ctagccacta 256  Q
    ||||||||||    
T  23198533 ctagccacta 23198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 23982018 - 23982124
Alignment:
Q  148 aagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatc 247  Q
    |||| ||||| |||||||||||| ||| |||||||||||||| |||  | |||||||| ||| |||| ||||||||||   |||||||| ||||||||||    
T  23982018 aagtataactcagttggtagctaccagggataatttgtgcagaggttagagttcgaactccggattctccatttctct--gcacataatgtgtgtgaatc 23982115  T
Q  248 tagccacta 256  Q
    |||||||||    
T  23982116 tagccacta 23982124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 27227371 - 27227255
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||| ||| ||||||||||||||  |||||| | | |||||| |||  |||||||| |||||  |||||||||| ||| ||||    
T  27227371 gtaagtgtagctcagttggtacctaccagagataatttgtataggggttgtgtttcgaatcccagattccccacttctc--cacacataatgtgtttgaa 27227274  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||||| |||||||    
T  27227273 tctagccactagactactt 27227255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 36877083 - 36877001
Alignment:
Q  142 tccagtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctc 224  Q
    |||||||||||   || |||||||||||| ||  |||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  36877083 tccagtaagtgatgctcagttggtagctaacatggataatttgtgcaggggtcggggttcgaaccccggatttcccacttctc 36877001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 27744580 - 27744692
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| |  ||||| |||||||||||||||||||||||| ||||  | ||||||||  || |||||||| |  |||||||||||||| ||||||||    
T  27744580 gtaagtgtagcgcagttgatagctatcagagataatttgtgca-gggttagagttcgaacatcggattccccact--tctccacacataatgtgtgtgaa 27744676  T
Q  246 tctagccactaaacta 261  Q
    | || |||||||||||    
T  27744677 tttaaccactaaacta 27744692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 37307667 - 37307768
Alignment:
Q  153 taacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagcc 252  Q
    ||||||||||| ||||||  ||||||| | ||||  ||||||||||||||||| ||| |||||||| |  |||||||| ||||| ||| |||||||||||    
T  37307667 taacttagttgatagctacaagagatattatgtgtcggggtcggggttcgaactccggattccccact--tctccacaaataatgtgtttgaatctagcc 37307764  T
Q  253 acta 256  Q
    ||||    
T  37307765 acta 37307768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 32958490 - 32958606
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| ||  ||||||||||| || | |||||||||||||| ||| | |||||||||||| |||| ||| |  | ||||||| |||| ||||||||    
T  32958490 gtaagtgtagctcggttggtagctaccaaaaataatttgtgcaggagtcagagttcgaaccccggattctccact--tatccacacttaatgtgtgtgaa 32958587  T
Q  246 tctagccactaaactactt 264  Q
    |||||||| || |||||||    
T  32958588 tctagccattacactactt 32958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 47684564 - 47684478
Alignment:
Q  176 gataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaactactt 264  Q
    |||||||||||||||||| |||||| |||||||| ||| || | |||||  || ||||||| |||||||||||||||| || |||||||    
T  47684564 gataatttgtgcaggggttggggtttgaaccccggatttcctacttctc--catacataatgtgtgtgaatctagccaatagactactt 47684478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 38524940 - 38524880
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaacc 206  Q
    ||||||||| |||||||||||| || |||| |||||||||||||| |||||| ||||||||    
T  38524940 gtaagtgtagcttagttggtagttaccagatataatttgtgcaggagtcgggcttcgaacc 38524880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 41780464 - 41780568
Alignment:
Q  149 agtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatct 248  Q
    |||||||||  ||||||||||||||  |||||||||||| |||||| ||||||||| |  ||||||| || |  ||| |||||||||| |||||||||||    
T  41780464 agtgtaactcggttggtagctatcatggataatttgtgccggggtcagggttcgaa-caagaattcctcact--tctacacacataatgtgtgtgaatct 41780560  T
Q  249 agccacta 256  Q
    | ||||||    
T  41780561 aaccacta 41780568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 45725203 - 45725122
Alignment:
Q  173 agagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||||||||||||||||||||| |||||| | |||||| | || ||||||  ||||||||| | ||| |||||||||||||    
T  45725203 agagataatttgtgcaggggtcgggattcgaatctcgaattactcacttctct--acacataatgtatgtaaatctagccacta 45725122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 251
Target Start/End: Original strand, 13054611 - 13054699
Alignment:
Q  161 ttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagc 251  Q
    |||||||||| ||| || ||| |||||||||| |||||||||||||||  ||| |||| |  |||||||||||||| |||| |||||||||    
T  13054611 ttggtagctaccagggaaaatatgtgcaggggccggggttcgaaccccagatttcccact--tctccacacataatgtgtgcgaatctagc 13054699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 25091175 - 25091277
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    |||||||||||| ||| |||||||||||||||||||| ||||| ||| ||  |||  |  |   ||| |||||||||| ||||||||||||||||||| |    
T  25091175 agttggtagctaccagggataatttgtgcaggggtcgaggttcaaactccagattttcact---tcttcacacataatgtgtgtgaatctagccactaga 25091271  T
Q  259 ctactt 264  Q
    ||||||    
T  25091272 ctactt 25091277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 44165994 - 44165878
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||| | || |||||||||||| ||| |||||||| ||||  | ||||| ||||||||  |||||||||   | |||||||||||||| ||||||||    
T  44165994 gtaagtgcagctcagttggtagctaccagggataatttatgcaaagatcgggattcgaaccttgaattcccccact-tctccacacataatgtgtgtgaa 44165896  T
Q  246 tctagccactaaactactt 264  Q
    ||| |||||||| ||||||    
T  44165895 tct-gccactaacctactt 44165878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 7683454 - 7683495
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaaactactt 264  Q
    |||||||||||||| |||||||||||| ||||||||||||||    
T  7683454 tctccacacataatgtgtgtgaatctaaccactaaactactt 7683495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 39584286 - 39584252
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaa 257  Q
    |||||||||||||||||||||| ||||||||||||    
T  39584286 tctccacacataatatgtgtgagtctagccactaa 39584252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 40097948 - 40097907
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaaactactt 264  Q
    |||||||||||||| ||||||||| ||| |||||||||||||    
T  40097948 tctccacacataatgtgtgtgaatttagacactaaactactt 40097907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 30746068 - 30746009
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccc 207  Q
    ||||| ||||| |||||||| |||||||  |||||||||||||||| ||||||| ||||||    
T  30746068 taagtataactcagttggtaactatcaggaataatttgtgcagggg-cggggtttgaaccc 30746009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 45284855 - 45284823
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccg 209  Q
    ||||||| |||||||||||||||||||||||||    
T  45284855 ataatttatgcaggggtcggggttcgaaccccg 45284823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 45664673 - 45664737
Alignment:
Q  141 atccagtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaac 205  Q
    |||| ||||||||| || ||||||||||||  ||||||||| | || |||||| |||||||||||    
T  45664673 atcccgtaagtgtagctcagttggtagctactagagataatgtttgtaggggttggggttcgaac 45664737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 34319922 - 34319806
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||| | || ||| ||||| | ||||| || ||||||  ||||||||| ||||||||    
T  34319922 gtaagtgtacctcagttggtagctatcagggataatttgtgcaggggccaggattctaaccctggattcctcacttctct--acacataatgtgtgtgaa 34319825  T
Q  246 tctagccactaaactactt 264  Q
    ||||||||||| |||||||    
T  34319824 tctagccactagactactt 34319806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 14368511 - 14368410
Alignment:
Q  158 tagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaa 257  Q
    ||||||||||||| ||  |||||||| |  |||||| |||||||||||| || |||||||| |||||  |||||||||| ||||||||||||||||||||    
T  14368511 tagttggtagctaccatggataatttatataggggttggggttcgaaccacggattccccacttctc--cacacataatgtgtgtgaatctagccactaa 14368414  T
Q  258 acta 261  Q
    ||||    
T  14368413 acta 14368410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 8915578 - 8915673
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||||||||||||| |||||||||| | |||| |||||||| |||||| |||||||| |  |||||| | ||||| |||||||||||||||||||    
T  8915578 agttggtagctatcagaaataatttgtgaatgggttggggttcgtaccccggattccccact--tctccataaataatgtgtgtgaatctagccacta 8915673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 37123570 - 37123673
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    |||| |||| |||||| ||||||||||| |||| ||||| |||||||||| |||| | || |||||  |||||||||| ||||||||||||||||||| |    
T  37123570 agttagtagttatcagggataatttgtgtagggttcgggattcgaaccccaaatttctcacttctc--cacacataatgtgtgtgaatctagccactaga 37123667  T
Q  259 ctactt 264  Q
    ||||||    
T  37123668 ctactt 37123673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 31069000 - 31068887
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||||||||||| ||  ||||||||||| ||||||||| ||| |||| ||| |||||||| |  ||||||||| |||| ||||||||    
T  31069000 gtaagtgtagctcagttggtagctaacattgataatttgtgtaggggtcggagtttgaactccggattccccact--tctccacacttaatgtgtgtgaa 31068903  T
Q  246 tctagccactaaacta 261  Q
    |||| |||||| ||||    
T  31068902 tctaaccactagacta 31068887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 9199037 - 9198932
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcag-gggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtga 244  Q
    ||||||||| || |||||||||||| |||||||||||||||||| |||  |||||||||||| |||||| |||| |  ||||||||||||  ||||||||    
T  9199037 gtaagtgtagctcagttggtagctaccagagataatttgtgcagcgggctggggttcgaacctcgaatttcccact--tctccacacata--atgtgtga 9198942  T
Q  245 atctagccac 254  Q
    || |||||||    
T  9198941 atttagccac 9198932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 3108168 - 3108229
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccc 207  Q
    |||||| ||| | |||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  3108168 gtaagtataattcagttggtagctatcagagataattggtgcagggatcggtgttcgaaccc 3108229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 44287825 - 44287897
Alignment:
Q  179 aatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagcca 253  Q
    ||||||||||| ||| ||| ||||||| ||| |||||||| |||||  |||||||||| ||||||||||||||||    
T  44287825 aatttgtgcagaggttgggattcgaactccggattccccacttctc--cacacataatgtgtgtgaatctagcca 44287897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 9294228 - 9294131
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||  | |||| ||||| |||||||||||||| |||||||||||| ||| ||| || |||||| ||| |  |||||||||||||| ||||||||    
T  9294228 gtaagtgtagttcagtttgtagccatcagagataatttctgcaggggtcggagtttgaa-cctgaattcaccact--tctccacacataatgtgtgtgaa 9294132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 20156980 - 20157021
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaaactactt 264  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  20156980 tctccacacataatgtgtgtgaatctagacactaaactactt 20157021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 13874446 - 13874554
Alignment:
Q  152 gtaacttagttggtagctatcagagataatttgtgcaggg-gtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctag 250  Q
    |||||| ||||||||||||||||||| | | |||||||||  | |||||||||||  |||||||| ||||  |||||||| || || ||| ||||| ||     
T  13874446 gtaactcagttggtagctatcagagacattatgtgcagggattgggggttcgaacatcgaattcctcatt--tctccacatattatgtgtatgaatttaa 13874543  T
Q  251 ccactaaacta 261  Q
    |||||||||||    
T  13874544 ccactaaacta 13874554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 14014571 - 14014679
Alignment:
Q  152 gtaacttagttggtagctatcagagataatttgtgcaggg-gtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctag 250  Q
    |||||| ||||||||||||||||||| | | |||||||||  | |||||||||||  |||||||| ||||  |||||||| || || ||| ||||| ||     
T  14014571 gtaactcagttggtagctatcagagacattatgtgcagggattgggggttcgaacatcgaattcctcatt--tctccacatattatgtgtatgaatttaa 14014668  T
Q  251 ccactaaacta 261  Q
    |||||||||||    
T  14014669 ccactaaacta 14014679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 34028098 - 34028206
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || |||| ||||||| ||| |||||||| |||||||||||| ||| |||| ||| ||||          |||||||||||| ||||||||    
T  34028098 gtaagtgtagctcagttagtagctaccagggataatttttgcaggggtcggagtttgaactccggattc----------tccacacataatgtgtgtgaa 34028187  T
Q  246 tctagccactaaactactt 264  Q
    |||| ||| ||||||||||    
T  34028188 tctaaccattaaactactt 34028206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 9932111 - 9932020
Alignment:
Q  156 cttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatcta 249  Q
    ||||| |||||||||  || |||||||||| ||| || |||  ||||||||||| |||||||| |  |||||||| ||||| ||||||||||||    
T  9932111 cttaggtggtagctacaagggataatttgtacagtggccggaattcgaaccccggattccccact--tctccacatataatgtgtgtgaatcta 9932020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 32087442 - 32087372
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccc 216  Q
    |||||||||  | ||||| |||||| ||| ||||||||||| || | ||||||||||||| ||||||||||    
T  32087442 gtaagtgtagttcagttgatagctaccagggataatttgtgtagagatcggggttcgaactccgaattccc 32087372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 21297422 - 21297467
Alignment:
Q  179 aatttgtgcaggggtcggggttcgaaccccgaattccccatttctc 224  Q
    |||||||||||||| ||||||||||||| || |||||||| |||||    
T  21297422 aatttgtgcaggggccggggttcgaacctcggattccccacttctc 21297467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 3596284 - 3596316
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccg 209  Q
    ||||||| |||||||||||||||||||||||||    
T  3596284 ataatttatgcaggggtcggggttcgaaccccg 3596316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 33816444 - 33816404
Alignment:
Q  185 tgcaggggtcggggttcgaaccccgaattccccatttctct 225  Q
    ||||||||||||| |||||||||||||  ||||||||||||    
T  33816444 tgcaggggtcgggtttcgaaccccgaacaccccatttctct 33816404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 35996980 - 35997088
Alignment:
Q  147 taagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaat 246  Q
    |||||||| || ||||||||||||||||||||||||||||||| ||| ||||||| ||  |||||||| ||| |  ||| |||||||||| ||||||| |    
T  35996980 taagtgtagctcagttggtagctatcagagataatttgtgcagtggttggggttcaaattccgaattctccact--tcttcacacataatgtgtgtgact 35997077  T
Q  247 ctagccactaa 257  Q
    |||||||||||    
T  35997078 ctagccactaa 35997088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 8757378 - 8757273
Alignment:
Q  149 agtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatct 248  Q
    |||||| ||||||||||||||| |||||| | | |||||||||| |||||||||||||| | ||||||||    |||||||||||||| |||||||||||    
T  8757378 agtgtagcttagttggtagctaccagagacattatgtgcaggggccggggttcgaaccctggattcccca--cgtctccacacataatgtgtgtgaatct 8757281  T
Q  249 agccacta 256  Q
    | ||||||    
T  8757280 aaccacta 8757273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 2661665 - 2661631
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaa 257  Q
    |||||||||||||||||||||||||||||||||||    
T  2661665 tctccacacataatatgtgtgaatctagccactaa 2661631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 7550013 - 7550091
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctc 224  Q
    ||||||||| || ||||| |||||| |||||| | | | |||||||| |||||||||||||||| |||||||| |||||    
T  7550013 gtaagtgtagctcagttgatagctaccagagacattatttgcaggggccggggttcgaaccccggattccccacttctc 7550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 50462233 - 50462183
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcgg 196  Q
    |||||||||||| ||||||||| ||||| |||||||||||| |||||||||    
T  50462233 gtaagtgtaactcagttggtagatatcaaagataatttgtgtaggggtcgg 50462183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 48977505 - 48977437
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattc 214  Q
    |||| |||| |||| |||||| |||||  ||||||||||||| | |||||||||||||||||| |||||    
T  48977505 gtaactgtagcttaattggtatctatccaagataatttgtgcggtggtcggggttcgaaccccaaattc 48977437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 1927613 - 1927654
Alignment:
Q  223 tctccacacataatatgtgtgaatctagccactaaactactt 264  Q
    |||||||||||||| ||||||||||||| ||| |||||||||    
T  1927613 tctccacacataatgtgtgtgaatctagtcaccaaactactt 1927654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 10632728 - 10632760
Alignment:
Q  177 ataatttgtgcaggggtcggggttcgaaccccg 209  Q
    ||||||| |||||||||||||||||||||||||    
T  10632728 ataatttatgcaggggtcggggttcgaaccccg 10632760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 14396481 - 14396521
Alignment:
Q  185 tgcaggggtcggggttcgaaccccgaattccccatttctct 225  Q
    |||||||||||||||||||||||||||  | ||||||||||    
T  14396481 tgcaggggtcggggttcgaaccccgaacactccatttctct 14396521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 264
Target Start/End: Complemental strand, 7326425 - 7326322
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaa 258  Q
    |||||||||||| ||| ||||||||| |||||||||||| |||||||||   |||||||| |  |||||||||||||| ||||||||| ||||||||| |    
T  7326425 agttggtagctaccagggataatttgagcaggggtcgggtttcgaaccctagattccccact--tctccacacataatgtgtgtgaatttagccactaga 7326328  T
Q  259 ctactt 264  Q
    ||||||    
T  7326327 ctactt 7326322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 256
Target Start/End: Complemental strand, 6922741 - 6922633
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||  | |||||||||||| ||   ||||||||||||||||||||||||| ||| ||  |||||||| |  |||||||| ||||| ||||||||    
T  6922741 gtaagtgtagttcagttggtagctaccatgaataatttgtgcaggggtcggggttcaaactccagattccccact--tctccacatataatgtgtgtgaa 6922644  T
Q  246 tctagccacta 256  Q
    |||||||||||    
T  6922643 tctagccacta 6922633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 7339497 - 7339604
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||||| |  || ||||||| |||||  || |  ||| |||||||||| ||||||||    
T  7339497 gtaagtgtaacttagttggtggctatcagaaataatttctgcaggggtcagaatttgaacccc-aattcttcact--tcttcacacataatgtgtgtgaa 7339593  T
Q  246 tctagccacta 256  Q
    |||||||||||    
T  7339594 tctagccacta 7339604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 12606651 - 12606763
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    ||||||||| || ||||||||||||  || ||||||||||| |||  ||| ||||||||||||  |||||||| |  ||| |||| ||||| ||||||||    
T  12606651 gtaagtgtagctcagttggtagctactagggataatttgtgtaggaatcgaggttcgaaccccagattccccact--tcttcacatataatgtgtgtgaa 12606748  T
Q  246 tctagccactaaact 260  Q
    |||||||||||||||    
T  12606749 tctagccactaaact 12606763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 5925580 - 5925690
Alignment:
Q  146 gtaagtgtaacttagttggtagc--tatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtg 243  Q
    |||||||||||| ||||||| ||  || ||||||| |||||||||||||  ||||||| || || | |||||||| ||||   |||||||||| ||||||    
T  5925580 gtaagtgtaactcagttggtggcgctaccagagatcatttgtgcaggggctggggttcaaatcctggattccccacttctt--cacacataatgtgtgtg 5925677  T
Q  244 aatctagccacta 256  Q
    |||||||||||||    
T  5925678 aatctagccacta 5925690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 8176925 - 8177020
Alignment:
Q  159 agttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccacta 256  Q
    ||||||||| ||||||||||||||| ||||||| |||  ||| ||||| ||||||| ||| |  |||||||||||||| ||| ||||| |||||||||    
T  8176925 agttggtagttatcagagataatttatgcagggatcgatgtttgaacctcgaattctccact--tctccacacataatgtgtatgaatttagccacta 8177020  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 20599499 - 20599421
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctc 224  Q
    ||||||||| || |||||||||||| ||| |||| | |||||| ||||||||||| |||||||| |||||||| |||||    
T  20599499 gtaagtgtagctcagttggtagctaccagggatattatgtgcaagggtcggggtttgaaccccggattccccacttctc 20599421  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 11063357 - 11063320
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataattt 183  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  11063357 gtaagtgtaactcagttggcagctatcagagataattt 11063320  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 12654525 - 12654488
Alignment:
Q  227 cacacataatatgtgtgaatctagccactaaactactt 264  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  12654525 cacacataatgtgtgtgaatctagccaataaactactt 12654488  T

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Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 58750 - 58639
Alignment:
Q  146 gtaagtgtaacttagttggtagctatcagagataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaa 245  Q
    |||| |||| || ||||||||||||||| ||| || ||||||  ||| ||  |||||||||||| ||| |||| |||||  ||||||| ||||||||||     
T  58750 gtaaatgtagctcagttggtagctatcaaagaaaaattgtgc--gggccgaagttcgaaccccggatttcccacttctc--cacacattatatgtgtgat 58655  T
Q  246 tctagccactaaacta 261  Q
    ||||||||||| ||||    
T  58654 tctagccactagacta 58639  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 7298 - 7212
Alignment:
Q  176 gataatttgtgcaggggtcggggttcgaaccccgaattccccatttctctccacacataatatgtgtgaatctagccactaaactactt 264  Q
    ||||||||||| ||||||| ||| ||||||  ||||||| ||| ||||||  | ||||||||||||| ||| |||||| |||| |||||    
T  7298 gataatttgtgtaggggtcagggatcgaacatcgaattctccacttctct--atacataatatgtgtaaatttagccaataaattactt 7212  T

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Target: scaffold0178 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 9753 - 9703
Alignment:
Q  203 aaccccgaattccccatttctctccacacataatatgtgtgaatctagccact 255  Q
    ||||||| |||||||| |||||  |||||||||| ||||||||||||||||||    
T  9753 aaccccggattccccacttctc--cacacataatgtgtgtgaatctagccact 9703  T

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