View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_14 (Length: 489)
Name: NF17615_high_14
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 43462920 - 43462461
Alignment:
| Q |
17 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaa |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43462920 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacaatgcataactccacgtgagtgacaagtctcaacaacactaacgatagttcttgcaa |
43462821 |
T |
|
| Q |
117 |
gtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcaga |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462820 |
gtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcaga |
43462721 |
T |
|
| Q |
217 |
atcttcataaactccttttatacatatcacatttggactcccaaccaagtgatgcattatcttaatctccatcctcacatcctctacatcatcatcttct |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
43462720 |
atcttcataaactccttttatacatatcacatttagactcccaaccaagtgatgcattatcttaatttccctcctcacatcctctacatcatcatcttct |
43462621 |
T |
|
| Q |
317 |
aacaatttcacctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaagtgaagtagttccgaattccccttctccaagttcat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43462620 |
aacaatttcacctttgggattaccttgcatgcatacgttttcccggttgatttctccaaacaaagtgaagtagttccaaattccccttctccaagttcat |
43462521 |
T |
|
| Q |
417 |
ctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattgattcttctc |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462520 |
ctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaattgattcttctc |
43462461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 43453481 - 43453034
Alignment:
| Q |
17 |
tcatgtccatcaacaaaaagaaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaa |
116 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| | |
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| T |
43453481 |
tcatctccatcaacaaaaaggaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgcga |
43453382 |
T |
|
| Q |
117 |
gtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcaga |
216 |
Q |
| |
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||||||| |||||| |||| ||| | | |||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| | | |
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| T |
43453381 |
gtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtcaaacaactcacctccttcacataattccattacaatataaacaacgaccgg |
43453282 |
T |
|
| Q |
217 |
atcttcataaactccttttatacatatcacatttggactcccaaccaagtgatgcattatcttaatctccatcctcacatcctctacatcatcatcttct |
316 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||| ||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||| ||| |
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| T |
43453281 |
atcttcataagctccttttattgatatcacatttggaatcccaactaagtgatgcattatttcaatctccctcctcacatcctctatatcattctctcta |
43453182 |
T |
|
| Q |
317 |
aacaatttcacctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaagtgaagtagttccgaattccccttctccaagttcat |
416 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||| || | |||| ||||||||||||||||||||||||||||||||| || | |||| |||||||||| |
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| T |
43453181 |
aacaattttacctttggtattgctttgcatgcgtatgtcttcctggttgatttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcat |
43453082 |
T |
|
| Q |
417 |
ctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaa |
464 |
Q |
| |
|
||||||||| ||| ||||| |||||| ||||||||||| |||||||| |
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|
| T |
43453081 |
ctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaa |
43453034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 404
Target Start/End: Original strand, 24420812 - 24421188
Alignment:
| Q |
28 |
aacaaaaagaaaattttcaggcttaagatcacgatgcataactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaagtttagcggcc |
127 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||| || ||| | || ||||| | || || ||||| ||||||||| ||||||||||| || ||| |
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|
| T |
24420812 |
aacaaaaagaaaattctccggcttaagatcgcgatgcattacaccaagagaatgacatgactgaataacaccaacaatagtccttgcaagtttcgccgcc |
24420911 |
T |
|
| Q |
128 |
ttttgttcggcgtagtaacctcttttcacaatcctatcaaacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaa |
227 |
Q |
| |
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||| ||| | || | ||||||| ||||||||||||||| | ||||| ||| ||| || ||||| |||| || |||| || ||| ||| ||| || |
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| T |
24420912 |
tttctttctgtataatgccctctttccacaatcctatcaaaaagttcaccacctgcacacaactccataacaacatgaacagcaacagcatcctcagaag |
24421011 |
T |
|
| Q |
228 |
ctccttttatacatatcacatttggactcccaaccaagtgatgcattatcttaatctccatcctcacatcctctacatcatcatcttctaacaatttcac |
327 |
Q |
| |
|
|| | || || | |||||||| | ||| ||| ||||||||||||| |||| |||||| |||||||||| || ||||| || || ||||| ||| |
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|
| T |
24421012 |
cttccttaatcgaaatcacattcgaactgccagccaagtgatgcataatctgaatctctctcctcacatcttccacatcctcttcagtcaacaacttcct |
24421111 |
T |
|
| Q |
328 |
ctttgggattaccttgcatgcataccttttcccggttgatttctccaaacaaagtgaagtagttccgaattcccctt |
404 |
Q |
| |
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||| |||| ||||||||||||| |||||| || |||||||||| |||||| | |||||||| |||| ||||| |
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|
| T |
24421112 |
cttcatgattgacttgcatgcatactctttcccagtagatttctccacacaaaggaatgtagttccaaattgccctt |
24421188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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