View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_17 (Length: 454)
Name: NF17615_high_17
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 37901651 - 37901223
Alignment:
| Q |
10 |
attattcttgtaggatatttctgtggaaaatgtttcacagatgtatgtgatgtcagacacttttaatgctacatcattaagatatgcatgcatactcttt |
109 |
Q |
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| T |
37901651 |
attattcttgtaggatatttctgtggaaaatgtttcacagatgtatgtgatgtcagacacttttaatgctacatcattaagatatgcatgcatactcttt |
37901552 |
T |
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| Q |
110 |
gtcctggagcaatttgataatctgagtaccaaaccatggtatgttatgttactctatttacaacttgaatagtacttctactgtaaactgcattgaccat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37901551 |
gtcctggagcaatttgataatctgagtaccaaaccatggtatgttatgttactctatttacaacttgaatagtacttctactgtaaactggattgaccat |
37901452 |
T |
|
| Q |
210 |
atttgttttctcaatcttaacatgcaggtatcgtcgctttcttcattgcattgtaccggacattcacaaattcttctcaactcttcttacccaccctcat |
309 |
Q |
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| T |
37901451 |
atttgttttctcaatcttaacatgcaggtatcgtcgctttcttcattgcattgtaccagacattcacaaattcttctcaactcttcttacccaccctcat |
37901352 |
T |
|
| Q |
310 |
ttggctaactcgtgccgtcgtgcggatccttagatttctaatctctgctcgaggaaggatgaaagtgtacaaagcagtaggtgtt--gttaattacaagc |
407 |
Q |
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| T |
37901351 |
ttggctaacttgtgccgtcgtgcggatccttagatttctaatctctccttgaggaaggatgaaagtgtacaaagcagtaggtgttgagttaattacaagc |
37901252 |
T |
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| Q |
408 |
acatttgcatgtcattctttggtccttag |
436 |
Q |
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| T |
37901251 |
acatttgcatgtcattctttggtccttag |
37901223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 37908162 - 37907734
Alignment:
| Q |
10 |
attattcttgtaggatatttctgtggaaaatgtttcacagatgtatgtgatgtcagacacttttaatgctacatcattaagatatgcatgcatactcttt |
109 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37908162 |
attattcttgtaggatatttctgtggaaaatgtttcacagatgtatgtgatgtcagacacttttaatgctacatcattaagatatgcatgcatactcttt |
37908063 |
T |
|
| Q |
110 |
gtcctggagcaatttgataatctgagtaccaaaccatggtatgttatgttactctatttacaacttgaatagtacttctactgtaaactgcattgaccat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37908062 |
gtcctggagcaatttgataatctgagtaccaaaccatggtatgttatgttactctatttacaacttgaatagtacttctactgtaaactggattgaccat |
37907963 |
T |
|
| Q |
210 |
atttgttttctcaatcttaacatgcaggtatcgtcgctttcttcattgcattgtaccggacattcacaaattcttctcaactcttcttacccaccctcat |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37907962 |
atttgttttctcaatcttaacatgcaggtatcgtcgctttcttcattgcattgtaccagacattcacaaattcttctcaactcttcttacccaccctcat |
37907863 |
T |
|
| Q |
310 |
ttggctaactcgtgccgtcgtgcggatccttagatttctaatctctgctcgaggaaggatgaaagtgtacaaagcagtaggtgtt--gttaattacaagc |
407 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37907862 |
ttggctaacttgtgccgtcgtgcggatccttagatttctaatctctccttgaggaaggatgaaagtgtacaaagcagtaggtgttgagttaattacaagc |
37907763 |
T |
|
| Q |
408 |
acatttgcatgtcattctttggtccttag |
436 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
37907762 |
acatttgcatgtcattctttggtccttag |
37907734 |
T |
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