View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_19 (Length: 439)
Name: NF17615_high_19
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 37141024 - 37141201
Alignment:
| Q |
79 |
gaatcaattgcacctagtttagttaggtgttggaaacttgacgaaatcaaaaggtcacactcgtagaatggtgttttttgggatatggaggcactctgag |
178 |
Q |
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| T |
37141024 |
gaatcaattgcacctagtttag----gtgttggaaacttgacgaaatcaaaaggtcacactcgtagaatggtgttttttgggatatggaggcactctgag |
37141119 |
T |
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| Q |
179 |
cttggacccaataaaatggaatacgcgttccttcttttgctcctcctcttccatatcttccttcctcactcttacggttcgt |
260 |
Q |
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| T |
37141120 |
cttggacccaataaaatggaatacgcgttccttcttttgctcctcctcttccatatcttccttcctcactcttacggttcgt |
37141201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 37141220 - 37141280
Alignment:
| Q |
362 |
ttttttgatttggtttctgatcggtattatggtgatccgttatattactctagttaactat |
422 |
Q |
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| T |
37141220 |
ttttttgatttggtttctgatcggtattatggtgatccgttatattactctagttaactat |
37141280 |
T |
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