View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_24 (Length: 400)

Name: NF17615_high_24
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_24
NF17615_high_24
[»] chr1 (7 HSPs)
chr1 (19-235)||(44142562-44142772)
chr1 (20-235)||(44134128-44134337)
chr1 (239-336)||(44142265-44142361)
chr1 (23-227)||(44129952-44130140)
chr1 (346-400)||(18391525-18391579)
chr1 (283-346)||(44129628-44129691)
chr1 (353-400)||(6194971-6195019)
[»] chr8 (3 HSPs)
chr8 (345-400)||(13331215-13331270)
chr8 (345-400)||(39660904-39660959)
chr8 (346-385)||(5827153-5827192)
[»] chr2 (3 HSPs)
chr2 (346-400)||(38316987-38317041)
chr2 (348-400)||(9748535-9748587)
chr2 (346-400)||(30994661-30994715)
[»] scaffold0637 (1 HSPs)
scaffold0637 (346-400)||(299-353)
[»] chr6 (5 HSPs)
chr6 (346-400)||(33680131-33680185)
chr6 (346-400)||(15579825-15579879)
chr6 (346-387)||(25328038-25328079)
chr6 (346-387)||(26160573-26160614)
chr6 (345-400)||(35028025-35028081)
[»] scaffold0401 (1 HSPs)
scaffold0401 (346-400)||(3385-3439)
[»] chr7 (5 HSPs)
chr7 (345-400)||(43548343-43548398)
chr7 (346-400)||(3542053-3542107)
chr7 (346-400)||(26152282-26152336)
chr7 (346-400)||(38430515-38430569)
chr7 (346-400)||(6963417-6963471)
[»] scaffold0083 (2 HSPs)
scaffold0083 (346-400)||(52251-52305)
scaffold0083 (346-400)||(28448-28502)
[»] chr5 (6 HSPs)
chr5 (347-400)||(26337113-26337166)
chr5 (260-324)||(1506458-1506522)
chr5 (346-400)||(9689892-9689946)
chr5 (346-400)||(33321857-33321911)
chr5 (346-400)||(40183103-40183157)
chr5 (346-386)||(35433425-35433464)
[»] chr3 (2 HSPs)
chr3 (346-400)||(18550796-18550851)
chr3 (351-389)||(36038006-36038044)
[»] scaffold0273 (1 HSPs)
scaffold0273 (346-400)||(20620-20674)
[»] chr4 (1 HSPs)
chr4 (346-400)||(56090249-56090303)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 44142772 - 44142562
Alignment:
Q  19 gtcgcttacggtggcttctgttatgcatgttgcagaccgcttgcaacatcaggggtagagtactgaattgtttcaaagactgtagttgtgacatcatgaa 118  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||  |||| || ||| |||||||||||||    
T  44142772 gtcgcttacagtggcttctgttatgcatgttgcagaccgttggcaacattaggggtagagtattgaattgttttgaagattgcagtggtgacatcatgaa 44142673  T
Q  119 ttggtgtgttcttgtattcaagcctcaaggcgtaaaggtggtcaagttcatgtgaattttcataaggg-gtgggttgtatttcaatatatgatgctggtt 217  Q
    ||| |||||||||| ||       |||||| |||||||||||||||||||||| |||||||||| ||| |||| ||| ||||||||  | ||||||||||    
T  44142672 ttgatgtgttcttgcat-------tcaaggtgtaaaggtggtcaagttcatgtaaattttcatatgggtgtggattgcatttcaatcaaggatgctggtt 44142580  T
Q  218 tttctttatgttgcaggc 235  Q
    |||||||||| |||||||    
T  44142579 tttctttatgatgcaggc 44142562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 44134337 - 44134128
Alignment:
Q  20 tcgcttacggtggcttctgttatgcatgttgcagaccgcttgcaacatcaggggtagagtactgaattgtttcaaagactgtagttgtgacatcatgaat 119  Q
    ||||||||||||||||||||||||||||||   ||||| ||||||||| |||||||||||  ||||||||||  |||| || ||| |||| |||||||||    
T  44134337 tcgcttacggtggcttctgttatgcatgtttaggaccgtttgcaacattaggggtagagtgttgaattgttttgaagattgcagtggtgatatcatgaat 44134238  T
Q  120 tggtgtgttcttgtattcaagcctcaaggcgtaaaggtggtcaagttcatgtgaattttcataaggg-gtgggttgtatttcaatatatgatgctggttt 218  Q
    |||||||||||||||||       ||||| |||||  ||| |||||||||||||||||||||||||| |||| ||| ||||||||  | |||||||||||    
T  44134237 tggtgtgttcttgtatt-------caaggtgtaaatttggacaagttcatgtgaattttcataagggtgtggattgcatttcaatcaaggatgctggttt 44134145  T
Q  219 ttctttatgttgcaggc 235  Q
    |||||||||||||||||    
T  44134144 ttctttatgttgcaggc 44134128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 44142361 - 44142265
Alignment:
Q  239 gagttagaagagtgcacacattacattactacatcttaaaatataattcacttgtaacaatcatctaatttattgtcttttatatgttaacccaattt 336  Q
    ||||| |||||||||||| ||| ||||||||||| |||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  44142361 gagttcgaagagtgcacaaattgcattactacattttaaaatataattcatctgtaacaatcatctaatttattgtc-tttatatgtcaacacaattt 44142265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 44130140 - 44129952
Alignment:
Q  23 cttacggtggcttctgttatgcatgttgcagaccgcttgcaacatcaggggtagagtactgaattgtttcaaagactgtagttgtgacatcatgaattgg 122  Q
    |||| ||||| |||||| ||||||||||||||||| ||||||||| | |||||||||| |||||| |||  |||| || ||| |||||||||||          
T  44130140 cttatggtggattctgtgatgcatgttgcagaccgtttgcaacattaagggtagagtattgaattattttgaagattgcagtggtgacatcatg------ 44130047  T
Q  123 tgtgttcttgtattcaagcctcaaggcgtaaaggtggtcaagttcatgtgaattttcataaggg-gtgggttgtatttcaatatatgatgctggtttttc 221  Q
        |||||||||| |||       | || |||||||||| |||||||||| |||||||||||| |||| |||||||| |||| | ||||||||||||||    
T  44130046 ----ttcttgtattaaag-------gtgttaaggtggtcaggttcatgtgagttttcataagggcgtggattgtattttaatacaggatgctggtttttc 44129958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 18391525 - 18391579
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||| |||||||  |||||||||||||||||||||||||| |||| |||||    
T  18391525 tgatgacaatacgtcattactagttttttagtcatatttgtgtcttttttgtaat 18391579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 44129691 - 44129628
Alignment:
Q  283 aattcacttgtaacaatcatctaatttattgtcttttatatgttaacccaatttaatccttaat 346  Q
    ||||||||||||||| ||||| ||||||  ||| ||||||||||||| ||||||| | ||||||    
T  44129691 aattcacttgtaacagtcatccaatttacagtcatttatatgttaacacaatttacttcttaat 44129628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 6194971 - 6195019
Alignment:
Q  353 agtacgtcaacactag-ttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||| ||||||||| |||||| ||||||||| |||||    
T  6194971 agtacgtcaacactagtttttttagttatatttttgtcatttttgtaat 6195019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 13331215 - 13331270
Alignment:
Q  345 atgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13331215 atgatgacagtacgtcaacactagttttttagtcatatttgtgtcatttttgtaat 13331270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 39660959 - 39660904
Alignment:
Q  345 atgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| |||| |||||    
T  39660959 atgatgacagtacgtcaacactagttttttagtcataattgcgtcgtttttgtaat 39660904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 5827153 - 5827192
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttg 385  Q
    |||||| |||||||||| ||||||||||||||||||||||    
T  5827153 tgatgaaagtacgtcaaaactagttttttagtcatatttg 5827192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 38317041 - 38316987
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38317041 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcatttttgtaat 38316987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 9748587 - 9748535
Alignment:
Q  348 atgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  9748587 atgacagtacgtcaacactagttttttagtcatatttgtgtcgtttttgtaat 9748535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 30994715 - 30994661
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||| |||||    
T  30994715 tgatgacagtacgtcattactagttttttagtcatatttgtgtcctttttgtaat 30994661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 299 - 353
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  299 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcctttttgtaat 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 33680185 - 33680131
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  33680185 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcctttttgtaat 33680131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 15579879 - 15579825
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||| ||||||||||||||||||| |||||| |||| |||| |||||    
T  15579879 tgatgacagtacatcaacactagttttttagttatatttttgtcctttttgtaat 15579825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 25328038 - 25328079
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtg 387  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  25328038 tgatgacagtacgtcattactagttttttagtcatatttgtg 25328079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 26160573 - 26160614
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtg 387  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  26160573 tgatgacagtacgtcattactagttttttagtcatatttgtg 26160614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 35028081 - 35028025
Alignment:
Q  345 atgatgacagtacgtcaacactagtttttt-agtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||| |||  ||||||||||| ||||||||||||||| |||| |||||    
T  35028081 atgatgacagtacatcattactagtttttttagtcatatttgtgtcttttttgtaat 35028025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 3385 - 3439
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  3385 tgatgacagtacgtcaacactagttttttagtcatatttgcgtcgtttttgtaat 3439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 400
Target Start/End: Original strand, 43548343 - 43548398
Alignment:
Q  345 atgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||  |||||||||||||||||||||||||| |||| |||||    
T  43548343 atgatgacagtacgtcattactagttttttagtcatatttgtgtcctttttgtaat 43548398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 3542107 - 3542053
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||||| ||||||||||||||||||||| ||| |||| |||||    
T  3542107 tgatgacagtacgtcaacgctagttttttagtcatatttgcgtcgtttttgtaat 3542053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 26152282 - 26152336
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||| |||||    
T  26152282 tgatgacagtacgtcattactagttttttagtcatatttgtgtcctttttgtaat 26152336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 38430515 - 38430569
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||    
T  38430515 tgatgacagtacgtaaacactagttttttagtcatatttgcgtcgtttttgtaat 38430569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 6963417 - 6963471
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||  ||  |||||||||||||||||||||||||| |||| |||||    
T  6963417 tgatgacagtacaccattactagttttttagtcatatttgtgtcctttttgtaat 6963471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 52251 - 52305
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||  |||||||||||||||||||||||||| |||| |||||    
T  52251 tgatgacagtacgtcattactagttttttagtcatatttgtgtcctttttgtaat 52305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 28448 - 28502
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||| |||| |||||    
T  28448 tgatgacagtatgtcaacactaggtttttagtcatatttgcgtcgtttttgtaat 28502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 26337113 - 26337166
Alignment:
Q  347 gatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||| |||||    
T  26337113 gatgacagtacgtcattactagttttttagtcatatttgtgtcctttttgtaat 26337166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 324
Target Start/End: Complemental strand, 1506522 - 1506458
Alignment:
Q  260 tacattactacatcttaaaatataattcacttgtaacaatcatctaatttattgtcttttatatg 324  Q
    ||||||||| ||| ||||||| ||||| ||||||| ||||||||||| || ||||||||||||||    
T  1506522 tacattactgcatattaaaatgtaatttacttgtatcaatcatctaacttgttgtcttttatatg 1506458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 9689892 - 9689946
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||   ||||||||||||||||||||||||| |||| |||||    
T  9689892 tgatgacagtacgtcattgctagttttttagtcatatttgtgtcctttttgtaat 9689946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 33321911 - 33321857
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||| |||||||  |||||||||||||||||||||||||| |||| |||||    
T  33321911 tgatgacactacgtcattactagttttttagtcatatttgtgtcctttttgtaat 33321857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 40183157 - 40183103
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||  |||| ||||||||||||||||||||| |||| |||||    
T  40183157 tgatgacagtacgtcattactaattttttagtcatatttgtgtcctttttgtaat 40183103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 35433464 - 35433425
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgt 386  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  35433464 tgatgacagtacgtcaacacta-tttattagtcatatttgt 35433425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 18550796 - 18550851
Alignment:
Q  346 tgatgacagtacgtcaacactag-ttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||    
T  18550796 tgatgacactacgtcaacactagtttttttactcatatttgtgtcatttttgtaat 18550851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 389
Target Start/End: Complemental strand, 36038044 - 36038006
Alignment:
Q  351 acagtacgtcaacactagttttttagtcatatttgtgtc 389  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  36038044 acagtacgtcattactagttttttagtcatatttgtgtc 36038006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 20674 - 20620
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    |||||||||||| |||  |||||||||||||||||||||||||| |||| |||||    
T  20674 tgatgacagtacatcattactagttttttagtcatatttgtgtcctttttgtaat 20620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 56090303 - 56090249
Alignment:
Q  346 tgatgacagtacgtcaacactagttttttagtcatatttgtgtcattttcgtaat 400  Q
    ||||||||||||||||  |||||||||||||| ||||||||||| |||| |||||    
T  56090303 tgatgacagtacgtcattactagttttttagttatatttgtgtcctttttgtaat 56090249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University