View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_25 (Length: 397)

Name: NF17615_high_25
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_25
NF17615_high_25
[»] chr6 (4 HSPs)
chr6 (151-256)||(21477791-21477896)
chr6 (151-256)||(21425215-21425320)
chr6 (251-383)||(21425036-21425153)
chr6 (251-295)||(21477684-21477728)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 21477896 - 21477791
Alignment:
Q  151 aattttcaagttttttgataaataaataaattgacacaataaaatcttcacattggggtaattaacatttaccttaatgacactgacacatatgttaata 250  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  21477896 aattttcaacttttatgataaataaataaattgacacaataaaatcttcacattgaggtacttaacatttaccttaacgacactgacacatatgttaata 21477797  T
Q  251 tttttt 256  Q
    ||||||    
T  21477796 tttttt 21477791  T

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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 151 - 256
Target Start/End: Complemental strand, 21425320 - 21425215
Alignment:
Q  151 aattttcaagttttttgataaataaataaattgacacaataaaatcttcacattggggtaattaacatttaccttaatgacactgacacatatgttaata 250  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  21425320 aattttcaacttttatgttaaataaataaattgacacaataaaatcttcacattgaggtacttaacatttaccttaacgacactgacacatatgttaata 21425221  T
Q  251 tttttt 256  Q
    ||||||    
T  21425220 tttttt 21425215  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 21425153 - 21425036
Alignment:
Q  251 ttttttaaaagccaaacaatgataattcattaaaatggcacagccnnnnnnngaaagataatacatgaatacttatacaaattccatcaaaaataagaca 350  Q
    |||||||||| |||||||| |||||||||||||||||||||||||       |||||||||||||||| ||||||||||               ||||||    
T  21425153 ttttttaaaatccaaacaaagataattcattaaaatggcacagccaaaaaaagaaagataatacatgagtacttataca---------------aagaca 21425069  T
Q  351 cacccaatacttgtgaaaactgaagtcactact 383  Q
    |||||||||||||||||||||||||||||||||    
T  21425068 cacccaatacttgtgaaaactgaagtcactact 21425036  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 21477728 - 21477684
Alignment:
Q  251 ttttttaaaagccaaacaatgataattcattaaaatggcacagcc 295  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  21477728 ttttttaaaagccaaacaaagataattcattaaaatggcacagcc 21477684  T

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