View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_33 (Length: 351)

Name: NF17615_high_33
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_33
NF17615_high_33
[»] chr7 (3 HSPs)
chr7 (8-335)||(3093754-3094092)
chr7 (8-66)||(21545261-21545319)
chr7 (8-65)||(26839606-26839663)
[»] chr1 (5 HSPs)
chr1 (7-66)||(50047741-50047800)
chr1 (7-62)||(11769404-11769459)
chr1 (1-65)||(30676079-30676143)
chr1 (1-66)||(23224029-23224094)
chr1 (1-41)||(12810836-12810876)
[»] chr8 (5 HSPs)
chr8 (1-65)||(15213156-15213220)
chr8 (1-65)||(24094809-24094873)
chr8 (8-66)||(12957161-12957219)
chr8 (1-66)||(29046702-29046767)
chr8 (8-65)||(32239916-32239973)
[»] chr6 (4 HSPs)
chr6 (1-56)||(16528299-16528354)
chr6 (8-66)||(17859884-17859942)
chr6 (8-42)||(15370144-15370178)
chr6 (8-40)||(15386583-15386615)
[»] chr5 (1 HSPs)
chr5 (1-47)||(17381401-17381447)
[»] scaffold0171 (1 HSPs)
scaffold0171 (8-66)||(21975-22033)
[»] chr2 (3 HSPs)
chr2 (8-66)||(9504567-9504625)
chr2 (8-66)||(9515933-9515991)
chr2 (3-47)||(23909060-23909104)
[»] chr4 (1 HSPs)
chr4 (1-65)||(9782497-9782561)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 3094092 - 3093754
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaattgtgtaatatgctttaatattcattttcacctttgctata 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3094092 aaactttattaattgaatccaacacataagaagggattcaacttagaactctaatcaaattgtgttatatgctttaatattcattttcacctttgctata 3093993  T
Q  108 agtttattactcactttgactgaaagtcgctgaattaccaa--------------gcctgcaacgattttgccatagcaattattggtttctttataaaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||| ||| |||||||||||||||||    
T  3093992 agtttattactcactttgactgaaagtcgctgaattaccaatactgcaaacacaagcctgcaacgattttgccatagctatttttggtttctttataaaa 3093893  T
Q  194 ttaaaaagaaacagagtagtgtataaaagttatgtttgagacagaggttatggttctagagaaaccaaaaatattatgcgaaaataaaacaaacaatctc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  3093892 ttaaaaagaaacagagtagtgtataaaagttatgtttgagacagaggttatggttctagagaaaccaaaaatattatgcgaaaataaa----acaatctc 3093797  T
Q  294 gtct-tgcgacgagtcttattatagtttcattttattaccaat 335  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  3093796 gtctgtgcgacgagtcttattatagtttcattttattaccaat 3093754  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 21545261 - 21545319
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||  |||||||||    
T  21545261 aaactttattaattaaatccaacaaataagaaggggttcatcttagaagcctaatcaaa 21545319  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 26839606 - 26839663
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaa 65  Q
    ||||||||||||| |||||||||| |||||||||| |||| ||| ||||  |||||||    
T  26839606 aaactttattaataaaatccaacaaataagaaggggttcatcttggaaccttaatcaa 26839663  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 50047800 - 50047741
Alignment:
Q  7 gaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    ||||||||||||||| ||||||||| |||||||||| |||| |||| |||||||||||||    
T  50047800 gaaactttattaattgaatccaacaaataagaaggggttcatcttataactctaatcaaa 50047741  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 11769404 - 11769459
Alignment:
Q  7 gaaactttattaattaaatccaacacataagaagggattcaacttagaactctaat 62  Q
    ||||||||||||||| ||||||||| |||||||||| |||| |||||||| |||||    
T  11769404 gaaactttattaattgaatccaacaaataagaaggggttcatcttagaaccctaat 11769459  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 30676143 - 30676079
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaa 65  Q
    |||||| |||||||||||||| ||||||||| |||||||||| |||| ||| ||||  |||||||    
T  30676143 tgaatgaaaactttattaattgaatccaacaaataagaaggggttcatcttcgaaccttaatcaa 30676079  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 23224094 - 23224029
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    ||||| ||||||||||||| | ||| ||||| |||||||||| |||| |||||||| | |||||||    
T  23224094 tgaatagaaactttattaactgaatgcaacatataagaaggggttcatcttagaacccaaatcaaa 23224029  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12810876 - 12810836
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagg 41  Q
    |||||| ||||||||||||||| |||||||| |||||||||    
T  12810876 tgaatgaaaactttattaattatatccaacaaataagaagg 12810836  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15213156 - 15213220
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaa 65  Q
    |||||| ||| |||||||||| ||||||||| ||||||||||||||| ||||||||  |||||||    
T  15213156 tgaatgaaaattttattaattgaatccaacagataagaagggattcatcttagaaccataatcaa 15213220  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24094873 - 24094809
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaa 65  Q
    |||||| | |||||||||||| ||||||||| ||||||||||||| | ||||||||  |||||||    
T  24094873 tgaatgaagactttattaattgaatccaacaaataagaagggattaatcttagaaccgtaatcaa 24094809  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 12957219 - 12957161
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    ||||||||||||| |||||||||| ||||||||| |||||  ||||||  |||||||||    
T  12957219 aaactttattaatgaaatccaacaaataagaaggcattcattttagaatcctaatcaaa 12957161  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29046702 - 29046767
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    |||||| ||||||||||||| || ||||||| |||||||||| |||| | | |||| |||||||||    
T  29046702 tgaatgaaaactttattaataaattccaacaaataagaaggggttcatcgtggaaccctaatcaaa 29046767  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 32239973 - 32239916
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaa 65  Q
    |||||||||||||| ||||||||| |||||||| | |||| |||| ||| ||||||||    
T  32239973 aaactttattaattgaatccaacaaataagaagaggttcatcttaaaaccctaatcaa 32239916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16528354 - 16528299
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaac 56  Q
    ||||| |||||||||||||| |||||||||| |||||||||| |||| ||||||||    
T  16528354 tgaatagaaactttattaatgaaatccaacaaataagaaggggttcatcttagaac 16528299  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 17859884 - 17859942
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    |||||||||||||| ||||||||| |||||||||  |||| ||| ||||||||||||||    
T  17859884 aaactttattaattgaatccaacaaataagaaggtgttcatcttggaactctaatcaaa 17859942  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 15370178 - 15370144
Alignment:
Q  8 aaactttattaattaaatccaacacataagaaggg 42  Q
    |||||||||||||||||||||||| ||||||||||    
T  15370178 aaactttattaattaaatccaacaaataagaaggg 15370144  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 15386615 - 15386583
Alignment:
Q  8 aaactttattaattaaatccaacacataagaag 40  Q
    |||||||||||||||||||||||| ||||||||    
T  15386615 aaactttattaattaaatccaacaaataagaag 15386583  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17381401 - 17381447
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattca 47  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||||    
T  17381401 tgaatgaaaactttattaattgaatccaacaaataagaagggattca 17381447  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 22033 - 21975
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    |||||||||||||  ||||||||| || ||||||| |||| ||||||||| ||||||||    
T  22033 aaactttattaatggaatccaacaaattagaaggggttcatcttagaactataatcaaa 21975  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9504625 - 9504567
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    ||||||| |||||  ||||||||| ||||||||||||||| ||||||||  ||||||||    
T  9504625 aaactttgttaatggaatccaacaaataagaagggattcatcttagaaccataatcaaa 9504567  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9515991 - 9515933
Alignment:
Q  8 aaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaaa 66  Q
    ||||||| |||||  ||||||||| ||||||||||||||| ||||||||  ||||||||    
T  9515991 aaactttgttaatggaatccaacaaataagaagggattcatcttagaaccataatcaaa 9515933  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 23909060 - 23909104
Alignment:
Q  3 aatggaaactttattaattaaatccaacacataagaagggattca 47  Q
    |||| ||||||||||||| || ||||||| |||||||||||||||    
T  23909060 aatgaaaactttattaataaattccaacaaataagaagggattca 23909104  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9782497 - 9782561
Alignment:
Q  1 tgaatggaaactttattaattaaatccaacacataagaagggattcaacttagaactctaatcaa 65  Q
    |||||| ||||||||||||| || ||||||| |||||||||| |||| | | |||| ||||||||    
T  9782497 tgaatgaaaactttattaataaattccaacaaataagaaggggttcatcgtggaaccctaatcaa 9782561  T

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