View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_34 (Length: 349)
Name: NF17615_high_34
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 10231300 - 10231621
Alignment:
| Q |
13 |
catcatcaagtcgtacaagtttgaaaaggcgctgtccaacaccagtccagcaatagaagggtcttcagctccataaagaaggctatatcataccaaagca |
112 |
Q |
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| T |
10231300 |
catcatcaagtcgtacaagtttgaaaaggcgctgtccaacaccagtccagcaatagaagggtcttcagctccataaagaaggctatatcataccaaagca |
10231399 |
T |
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| Q |
113 |
aaataagaagtcaaattacacaggagaattttgcatacaggtggctcagcattgaggtnnnnnnnnnnnnnnnnnnnnnnncttgttttcttttattgag |
212 |
Q |
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| T |
10231400 |
aaataagaagtcaaattacacaggagaatcttgcatacaggtggctcagcattgaggtaaaaagtaaaaggaaaagaaaaacttgttttcttttattgag |
10231499 |
T |
|
| Q |
213 |
ggccctttgatttcattccttgtttgtgtacaatt----tataaatatatagaacataaatttttaccaaaatcaaacaagttggtagaagatgtgatac |
308 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231500 |
ggccctttgatttcattccttgtttgtgtacaattagaatataaatatatagaacataaatttttaccaaaatcaaacaagttggtagaagatgtgatac |
10231599 |
T |
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| Q |
309 |
ctagtgacagctcccattgatc |
330 |
Q |
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| T |
10231600 |
ctagtgacagctcccattgatc |
10231621 |
T |
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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 56247749 - 56247834
Alignment:
| Q |
29 |
aagtttgaaaaggcgctgtccaacaccagtccagcaatagaagggtcttcagctccataaagaaggctatatcataccaaagcaaa |
114 |
Q |
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| T |
56247749 |
aagttagaaaaggcgctatccaataccattccagcaatagaagggtcttcggctccataaagaaggctaaatcccaccaaagcaaa |
56247834 |
T |
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