View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_36 (Length: 339)
Name: NF17615_high_36
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_36 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 109 - 339
Target Start/End: Original strand, 26312302 - 26312524
Alignment:
| Q |
109 |
cccataccaatcccttaaatagggctagtgtaacatattgattgttggggtcggtacctattttgttttcgtatttagcttcaagtggagtcacatagct |
208 |
Q |
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| T |
26312302 |
cccataccaatcccttaaatagggctagtgtaacatattgatt--------cggtacctattttgttttagtatttagcttcaaatggagtcacatagct |
26312393 |
T |
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| Q |
209 |
tttccagtgatgtatggtcctgttaaagagggtaaagacgagatgtgagagacagagaaagagctaggatggaggctctaatagaataggagattcagca |
308 |
Q |
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| T |
26312394 |
tttccagtgatgtatggtcctgttaaagagggtaaagacgagatgtgagagacagagaaagagctaggatggaggctctaatagaatcggagattcagca |
26312493 |
T |
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| Q |
309 |
tattgaatcagatgggttagtcgtggatcac |
339 |
Q |
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| T |
26312494 |
tattgaatcagatgggttagtcgtggatcac |
26312524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 26311717 - 26311810
Alignment:
| Q |
23 |
acccaactatggaggcgttgccacccatggtggtctaaaaatgggggaccatttactggacagtggctagttgtcgagttatatcccccatacc |
116 |
Q |
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| T |
26311717 |
acccaactatggaggcgttgccacccgtggtggtctaaaaatgggggaccatttactggacagtggctacttgtcgagttatatcccccatacc |
26311810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 26288247 - 26288328
Alignment:
| Q |
255 |
gagagacagagaaagagctaggatggaggctctaatagaataggagattcagcatattgaatcagatgggttagtcgtggat |
336 |
Q |
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| T |
26288247 |
gagagacagagaaagagctaggatggaggctttaatagaatcggagatgcagcatattgaatcagatgggttagtcgtggat |
26288328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 26319932 - 26319997
Alignment:
| Q |
176 |
ttcgtatttagcttcaagtggagtcacatagcttttccagtgatgtatggtcctgttaaagagggt |
241 |
Q |
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| T |
26319932 |
ttcgtatttagctttaagtggagtcccatagttcttccagtgatgtatggtcctgttaaaaagggt |
26319997 |
T |
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