View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_5 (Length: 679)

Name: NF17615_high_5
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_5
NF17615_high_5
[»] chr7 (1 HSPs)
chr7 (19-672)||(34670670-34671323)


Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 672
Target Start/End: Original strand, 34670670 - 34671323
Alignment:
Q  19 gacgccctccgttacgccatgtgagaatttttattgtaatcaatactaagttgtttagccatggctctcatggagacgaataaaacnnnnnnntcttcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||       |||||||    
T  34670670 gacgccctccgttacgccatgtgagaatttttattgtaatcaatactaagttgtttagccatggctctcatggagacaaatccaacaaaaaaatcttcaa 34670769  T
Q  119 atcttcacataaaaggacagatttttctactatgcacagcacaatctcgtaggtccttcggcatagtgatgtccgtgacacttagctgattagtttattt 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34670770 atcttcacataaaaggacagatttttctactatacacagcacaatctcgtaggtccttcggcatagtgatgtccgtgacacttagctgattagtttattt 34670869  T
Q  219 tattcatgccatattttatatctttaaatttccagtggataaggattccagttaattattggacgatcgggtcga-tttcaatgataaatttaggatcgg 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  34670870 tattcatgccatattttatatctttaaatttccagtagataaggattccagttaattattggacgatcgggtcgattttcaatgataaatttaggatcga 34670969  T
Q  318 aaatctcgnnnnnnnncgaaaattataaatactttatcacgatgtcagtgttcatgaaaattaacatgccacagccatatgagtacaaatgaaagaatat 417  Q
    ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34670970 aaatctcg-tttttttcgaaaattataaatactttatcacgatgtcagtgttcatgaaaattaacatgccacagccatatgagtacaaatgaaagaatgt 34671068  T
Q  418 ttattctaactctaccatcgtagttggtttgaataaagcaaattatannnnnnnattacataataccatatagcaatgtcttcnnnnnnnnataattaaa 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||         | |||||||    
T  34671069 ttattctaactctaccatcgtagttggtttgaataaagcaaattatatttttttattacagaataccatatagcaatgtctttttttttttaaaattaaa 34671168  T
Q  518 ttagcccaccgaaattaatatcggagacaaccaaatcagagactttaattaagaggaacccactcaaagaggaacttactccaagatcttaaaccaacac 617  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  34671169 ttagcccatcaaaattaatatcggagacaatcaaatcagagactttaattaagaggaatccacttaaagaggaacttactccaagatcttaaaccaacac 34671268  T
Q  618 catcaaactaattcaaatggattatcataaagatacttaatagggaattttattc 672  Q
    || |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34671269 caccaaactaattcaaatggattatcataaagaaacttaatagggaattttattc 34671323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University