View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_53 (Length: 256)
Name: NF17615_high_53
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_53 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5310305 - 5310065
Alignment:
| Q |
1 |
tgatcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaat-aatacaaaaccaatcacataatgactagtctc |
99 |
Q |
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| T |
5310305 |
tgatcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaattaatacaaaaccaatcacataatgactattctc |
5310206 |
T |
|
| Q |
100 |
tttatttatttttt-gacgaaaaaataattgatcttttaatgtaaataatgtttatcaatttgccaggcaatatgaatatcatgacttctacagataatg |
198 |
Q |
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| T |
5310205 |
tttatttatttttttgacgaaaaaataattgatcttttaatgtaaataatgtttatcaatttgctaggcaatatgaatatcacgacttctacagataatg |
5310106 |
T |
|
| Q |
199 |
acatatgtaccgtattttaagtaattaactatggtgatcat |
239 |
Q |
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| T |
5310105 |
acatatgtaccgtattttaagtaattaactatggtgatcat |
5310065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5315019 - 5314794
Alignment:
| Q |
1 |
tgatcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaata-atac---aaaaccaatcacataatgactagt |
96 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| |||| | ||||||||| ||||||||| || |
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| T |
5315019 |
tgatcatagatttatcacctgaagtagttataatgaaatggcattagcacatcaatttttgtgtaatatatactatataaccaatcagataatgactggt |
5314920 |
T |
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| Q |
97 |
ctctttatttattttttgacgaaaaaataattgatcttttaatgtaaataatgtttatcaatttgccaggcaatatgaatatcat----gacttctacag |
192 |
Q |
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| T |
5314919 |
ctc------tattttttggacaaataataattgatttcttaatgcaagtaatgtatataaatatggttggcaatactaatatcatgagcgatttctacaa |
5314826 |
T |
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| Q |
193 |
ataatgacatatgtaccgtattttaagtaatt |
224 |
Q |
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| T |
5314825 |
ataatgacatttgtaccgtatttttagtaatt |
5314794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5289911 - 5290004
Alignment:
| Q |
1 |
tgatcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaata-ata-caaaaccaatcacataatgac |
92 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||||| |
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| T |
5289911 |
tgatcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgac |
5290004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5302404 - 5302311
Alignment:
| Q |
1 |
tgatcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaata-ata-caaaaccaatcacataatgac |
92 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||||| |
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| T |
5302404 |
tgatcatggatttatcacctgaagtagttataatggaatgacattagcacatcagtttttgggtaatatataccaaaaccaatcacataatgac |
5302311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 5284216 - 5284124
Alignment:
| Q |
1 |
tgatcatagatttatcacctgaagtggttataatgaaatgacattagcacattaatttttgggtaata-ata-caaaaccaatcacataatga |
91 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| ||| ||| |||||||||||||||||||| |
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| T |
5284216 |
tgatcatagatttatcacctgaagtagttataataaaatgacattagcacatcagtttttgggtgatatataccaaaaccaatcacataatga |
5284124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1482101 - 1482063
Alignment:
| Q |
1 |
tgatcatagatttatcacctgaagtggttataatgaaat |
39 |
Q |
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| T |
1482101 |
tgatcatagatttatcacctgaagtagttataaagaaat |
1482063 |
T |
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