View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_high_54 (Length: 255)
Name: NF17615_high_54
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_high_54 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 41378355 - 41378463
Alignment:
| Q |
102 |
agtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacaccatacatccgaaccttccaaggatcaacctccaaccgaactg |
201 |
Q |
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| T |
41378355 |
agtaatgacgcaagcatatacctaagacataaccacaagcataccattgcgtcaacaccatacatccgaaccttccaaggatcaaccttcaaccgaactg |
41378454 |
T |
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| Q |
202 |
tacacaagc |
210 |
Q |
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| T |
41378455 |
cacacaagc |
41378463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 41378270 - 41378304
Alignment:
| Q |
15 |
caaaggggaaatcggttgctacacaaactccggct |
49 |
Q |
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| T |
41378270 |
caaaggggaaatcggttgccacacaaactccggct |
41378304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 41378513 - 41378542
Alignment:
| Q |
226 |
caggccagcaaaggaaaacacccacttaag |
255 |
Q |
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| T |
41378513 |
caggccagcaaaggaaaacacccacttaag |
41378542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 25829424 - 25829483
Alignment:
| Q |
101 |
gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc |
160 |
Q |
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| T |
25829424 |
gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc |
25829483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 23173132 - 23173191
Alignment:
| Q |
101 |
gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc |
160 |
Q |
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| T |
23173132 |
gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc |
23173191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 33320678 - 33320618
Alignment:
| Q |
101 |
gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacca |
161 |
Q |
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| T |
33320678 |
gagtaatgacgcaaacatataccaatgacttaaccacaagaatagccctgcgtcaacacca |
33320618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 30655758 - 30655817
Alignment:
| Q |
101 |
gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacca |
161 |
Q |
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| T |
30655758 |
gagtaatgacgccggcatatacaaatgaca-atccacaagcatacccctgcgtcaacacca |
30655817 |
T |
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