View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_66 (Length: 222)

Name: NF17615_high_66
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_66
NF17615_high_66
[»] chr3 (2 HSPs)
chr3 (132-215)||(37385354-37385437)
chr3 (19-103)||(37385241-37385325)
[»] chr5 (1 HSPs)
chr5 (164-207)||(36599268-36599311)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 37385354 - 37385437
Alignment:
Q  132 gttaattaaatgtgtatatataatgtaccaggacatctgaagtggcattatcataaccagtagcagcagaagcaaaggagacac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37385354 gttaattaaatgtgtatatataatgtaccaggacatctgaagtggcattatcataaccagtagcagcagaagcaaaggagacac 37385437  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37385241 - 37385325
Alignment:
Q  19 ataccgtgaaaaacacaagagatgcattttatagctagagaataaacactaccatttagagaattcataggtttataagtagcat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  37385241 ataccgtgaaaaacacaagagatgcattttatagctagagaataaacactaccatttagtgaattcataagtttataagtagcat 37385325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 36599311 - 36599268
Alignment:
Q  164 acatctgaagtggcattatcataaccagtagcagcagaagcaaa 207  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  36599311 acatctgaagttgcattatcataaccagtagcagcagaagcaaa 36599268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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